Browse Element(s) Details


OsAffx.13243.1.S1_at

Description tigr:9631.m03752
TID=OsAffx.13243.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=No apical meristem (NAM) protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3905011/11No apical meristem protein
LOC_Os03g391002/11No apical meristem protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g39000Os.8893.1.S1_at10/113+21636579..21639637Inositol monophosphatase 3, putative, expressed
LOC_Os03g39010Os.22996.1.S1_a_at11/113+21640127..21641888Possible lysine decarboxylase family protein, expressed
LOC_Os03g39010OsAffx.22179.1.S1_at1/113+21640127..21641888Possible lysine decarboxylase family protein, expressed
LOC_Os03g39020Os.50595.1.S1_at11/113+21642000..21647792kinesin heavy chain, putative, expressed
LOC_Os03g39040OsAffx.22944.5.S1_at11/113+21655685..21657943Zinc knuckle family protein
LOC_Os03g39050OsAffx.13243.1.S1_at11/113+21662929..21664370No apical meristem protein
LOC_Os03g39050OsAffx.13243.2.S1_at3/113+21662929..21664370No apical meristem protein
LOC_Os03g39080NANA3+21673375..21674987hypothetical protein
LOC_Os03g39090OsAffx.25428.1.S1_at10/113+21679056..21680225hypothetical protein
LOC_Os03g39100OsAffx.13243.2.S1_at11/113+21680788..21682290No apical meristem protein
LOC_Os03g39100OsAffx.13243.1.S1_at2/113+21680788..21682290No apical meristem protein
LOC_Os03g39110OsAffx.26598.2.S1_x_at9/113+21682968..21685277expressed protein
LOC_Os03g39110Os.27372.1.A1_at6/113+21682968..21685277expressed protein
LOC_Os03g39110OsAffx.26598.2.S1_at6/113+21682968..21685277expressed protein
LOC_Os03g39110Os.21300.2.S1_x_at1/113+21682968..21685277expressed protein
LOC_Os03g39129Os.48549.1.A1_at11/113+21687636..21692645expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13243.1.S1_at--470--152Chr03:21681740..21681806 (25 bp)
ATTATTGGCGGGAAGCCGATGCCAC
LOC_Os03g39100
OsAffx.13243.1.S1_at--593--1431Chr03:21664021..21664045 (25 bp)
AGAACTCCTACGACGTGATGGCCGA
LOC_Os03g39050
OsAffx.13243.1.S1_at--312--1991Chr03:21664024..21664048 (25 bp)
ACTCCTACGACGTGATGGCCGATTC
LOC_Os03g39050
OsAffx.13243.1.S1_at--75--5071Chr03:21664179..21664203 (25 bp)
GCAGCTCCAGTGCTGAACAAGCAGA
LOC_Os03g39050
OsAffx.13243.1.S1_at--274--4791Chr03:21664182..21664206 (25 bp)
GCTCCAGTGCTGAACAAGCAGAGTA
LOC_Os03g39050
OsAffx.13243.1.S1_at--997--1151Chr03:21664203..21664227 (25 bp)
AGTAACTCCTCACCTTTGGGCGTCA
LOC_Os03g39050
OsAffx.13243.1.S1_at--526--3371Chr03:21664213..21664237 (25 bp)
CACCTTTGGGCGTCATGGACAGCGA
LOC_Os03g39050
OsAffx.13243.1.S1_at--516--3391Chr03:21664232..21664256 (25 bp)
CAGCGAGGTGCCGATTGTGTTGTCT
LOC_Os03g39050
OsAffx.13243.1.S1_at--1024--9171Chr03:21664240..21664264 (25 bp)
TGCCGATTGTGTTGTCTGATCTAGA
LOC_Os03g39050
OsAffx.13243.1.S1_at--47--3611Chr03:21664298..21664322 (25 bp)
CATTGACTTCGCCACGGATGACTGC
LOC_Os03g39050
OsAffx.13243.1.S1_at--1027--4352Chr03:21664309..21664333 (25 bp)
CCACGGATGACTGCCTCGATTTCGA
LOC_Os03g39050
Target Sequence 
ATTATTGGCGGGAAGCCGATGCCACCGGTGGTGCAGAGAGAGAAGAGATCGCTCTGCTCGACGAGGAGCGCTGCCCGCAA
CCACAGCCCGCTCCTCCTACTGATGCTCTAGTGCCACCACTGCAGGGCCAGAACTCCTACGACGTGATGGCCGATTCGTC
ACTGCTATTTGCTGATCTTCCCGGGAGAATCGATGACGATGAGCTACAGCGATCTCTGCGTGTGTCGGACATGCCTGACC
TGTTCTTGTCGCAGACAGAGGAAGCCGGTGCCGGTGGTGGTGGTGGCGCAGCTCCAGTGCTGAACAAGCAGAGTAACTCC
TCACCTTTGGGCGTCATGGACAGCGAGGTGCCGATTGTGTTGTCTGATCTAGAGTTCCCAGAGAGCATTGATGAAGTGCT
TAGCTACATTGACTTCGCCACGGATGACTGCCTCGATTTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13243.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis