Browse Element(s) Details


Os.22996.1.S1_a_at

Description gb:AK064020.1
DB_XREF= gi:32974038
TID=Os.22996.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22996 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 29885 unknown mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-125-A02, full insert sequence.
FL= gb:AK064020.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3901011/11Possible lysine decarboxylase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g38980Os.27850.1.S1_at11/113+21619910..21628223Lysyl-tRNA synthetase, putative, expressed
LOC_Os03g38990Os.9254.1.S1_at11/113+21628349..21635002DNA helicase family protein, expressed
LOC_Os03g39000Os.8893.1.S1_at10/113+21636579..21639637Inositol monophosphatase 3, putative, expressed
LOC_Os03g39010Os.22996.1.S1_a_at11/113+21640127..21641888Possible lysine decarboxylase family protein, expressed
LOC_Os03g39010OsAffx.22179.1.S1_at1/113+21640127..21641888Possible lysine decarboxylase family protein, expressed
LOC_Os03g39020Os.50595.1.S1_at11/113+21642000..21647792kinesin heavy chain, putative, expressed
LOC_Os03g39040OsAffx.22944.5.S1_at11/113+21655685..21657943Zinc knuckle family protein
LOC_Os03g39050OsAffx.13243.1.S1_at11/113+21662929..21664370No apical meristem protein
LOC_Os03g39050OsAffx.13243.2.S1_at3/113+21662929..21664370No apical meristem protein

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0016831molecular_functioncarboxy-lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22996.1.S1_a_at--831--1971Chr03:21641298..21641322 (25 bp)
ACTGCCATCATTGCATTACCTGGTG
LOC_Os03g39010
Os.22996.1.S1_a_at--711--5911Chr03:21641340..21641364 (25 bp)
GAGCTTTTCGAGATGATGGCGCTAA
LOC_Os03g39010
Os.22996.1.S1_a_at--817--3131Chr03:21641363..21641387 (25 bp)
AATTCAACTGGAGCGGATCGGTTCC
LOC_Os03g39010
Os.22996.1.S1_a_at--906--111Chr03:21641402..21641426 (25 bp)
ATTCTTGCTCCTCAATTATGATTCT
LOC_Os03g39010
Os.22996.1.S1_a_at--181--8831Chr03:21641420..21641444 (25 bp)
TGATTCTTACTACTCCAAACTATTG
LOC_Os03g39010
Os.22996.1.S1_a_at--448--8131Chr03:21641444..21641468 (25 bp)
GGACTTTCTGAATGACTGCGAGGAG
LOC_Os03g39010
Os.22996.1.S1_a_at--896--4791Chr03:21641481..21641505 (25 bp)
GCTCCGGGAGAAGTAGCATCTCTTT
LOC_Os03g39010
Os.22996.1.S1_a_at--22--5411Chr03:21641529..21641553 (25 bp)
GAAGCTTTGGAGTACCTGGCACAGT
LOC_Os03g39010
Os.22996.1.S1_a_at--39--8231Chr03:21641546..21641570 (25 bp)
GGCACAGTTCTACAATGTACCTCTT
LOC_Os03g39010
Os.22996.1.S1_a_at--777--1511Chr03:21641605..21641629 (25 bp)
AGCAGCAGGCAACTTCATAGGCCAC
LOC_Os03g39010
Os.22996.1.S1_a_at--894--271Chr03:21641621..21641645 (25 bp)
ATAGGCCACAAGTTGACGATTCAGG
LOC_Os03g39010
Target Sequence 
ACTGCCATCATTGCATTACCTGGTGGGATAGGGACGCTGGATGAGCTTTTCGAGATGATGGCGCTAATTCAACTGGAGCG
GATCGGTTCCACGCTTCCAGTCCCATTCTTGCTCCTCAATTATGATTCTTACTACTCCAAACTATTGGACTTTCTGAATG
ACTGCGAGGAGTGGGGAACCGTTGCTCCGGGAGAAGTAGCATCTCTTTGGAAGGTTTGCAATGGGAATCATGAAGCTTTG
GAGTACCTGGCACAGTTCTACAATGTACCTCTTGCTGAAAGAAATTACTGCATATCACCACAGTTGAAGCAGCAGGCAAC
TTCATAGGCCACAAGTTGACGATTCAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22996.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis