Browse Element(s) Details


Os.50595.1.S1_at

Description gb:AK121995.1
DB_XREF= gi:37991618
TID=Os.50595.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50595 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033110A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033110A05, full insert sequence.
FL= gb:AK121995.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3902011/11kinesin heavy chain, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g38980Os.27850.1.S1_at11/113+21619910..21628223Lysyl-tRNA synthetase, putative, expressed
LOC_Os03g38990Os.9254.1.S1_at11/113+21628349..21635002DNA helicase family protein, expressed
LOC_Os03g39000Os.8893.1.S1_at10/113+21636579..21639637Inositol monophosphatase 3, putative, expressed
LOC_Os03g39010Os.22996.1.S1_a_at11/113+21640127..21641888Possible lysine decarboxylase family protein, expressed
LOC_Os03g39010OsAffx.22179.1.S1_at1/113+21640127..21641888Possible lysine decarboxylase family protein, expressed
LOC_Os03g39020Os.50595.1.S1_at11/113+21642000..21647792kinesin heavy chain, putative, expressed
LOC_Os03g39040OsAffx.22944.5.S1_at11/113+21655685..21657943Zinc knuckle family protein
LOC_Os03g39050OsAffx.13243.1.S1_at11/113+21662929..21664370No apical meristem protein
LOC_Os03g39050OsAffx.13243.2.S1_at3/113+21662929..21664370No apical meristem protein

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Gene Ontology Classification
GO idTypeName
GO:0003777molecular_functionmicrotubule motor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50595.1.S1_at--1061--5491Chr03:21642673..21642697 (25 bp)
GAACAGAAGGCTCCGCATTCAGCTT
LOC_Os03g39020
Os.50595.1.S1_at--561--1591Chr03:21642640..21642664 (25 bp)
AGCTGAAGCTGTCCATGCTGCTGGA
LOC_Os03g39020
Os.50595.1.S1_at--108--6331Chr03:21642366..21642390 (25 bp)
GATGAAGCACTTCCTTGCGGACAGC
LOC_Os03g39020
Os.50595.1.S1_at--944--8031Chr03:21642285..21642309 (25 bp)
GGAGTACAACAACCATGCCACTTCT
LOC_Os03g39020
Os.50595.1.S1_at--182--9211Chr03:21642270..21642294 (25 bp)
TGCCACTTCTACATGCGACGATGAT
LOC_Os03g39020
Os.50595.1.S1_at--777--6291Chr03:21642251..21642275 (25 bp)
GATGATCAATCTTGGCGTGCTGCGT
LOC_Os03g39020
Os.50595.1.S1_at--568--4651Chr03:21642237..21642261 (25 bp)
GCGTGCTGCGTTTACATCTGCATAT
LOC_Os03g39020
Os.50595.1.S1_at--1064--6091Chr03:21642208..21642232 (25 bp)
GAGTCTGAATGATTGCTTCGCTCGA
LOC_Os03g39020
Os.50595.1.S1_at--190--3651Chr03:21642193..21642217 (25 bp)
CTTCGCTCGAGGATCTGTCAATTGA
LOC_Os03g39020
Os.50595.1.S1_at--959--5531Chr03:21642151..21642175 (25 bp)
GAAACGCGCTTTTCTTTGGTCTATT
LOC_Os03g39020
Os.50595.1.S1_at--603--51Chr03:21642089..21642113 (25 bp)
ATTGTTATTCAAATGCCCTTCTGGT
LOC_Os03g39020
Target Sequence 
GAACAGAAGGCTCCGCATTCAGCTTCGCGACACAGCTGAAGCTGTCCATGCTGCTGGAGAACTTCTTGTAAGATTGAGAG
AGGCAGAGGAGGCATCCACACAAGAAAAGGAGAGGAGTGCAGCGATGCAGCAGGAGAACGACAAGCTCAAGAAGCAGCTG
GAGAAGATGAAGAAGAAGCACGAGATGGAGATGGAGACGATGAAGCACTTCCTTGCGGACAGCCGGCTGCCGGAGTCAGC
ACTGGGGGGATTCTACCGGCAGGAGAGCGAGGATGTACCGGAGTACAACAACCATGCCACTTCTACATGCGACGATGATC
AATCTTGGCGTGCTGCGTTTACATCTGCATATGAATGAGTCTGAATGATTGCTTCGCTCGAGGATCTGTCAATTGAGCCT
GGTTGACAATTAGGAAACGCGCTTTTCTTTGGTCTATTTCTTATGTTTGTTCAGGTACACCAATACGAATATATGATTGT
TATTCAAATGCCCTTCTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50595.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis