Browse Element(s) Details


OsAffx.13243.2.S1_at

Description tigr:9631.m03755
TID=OsAffx.13243.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=No apical meristem (NAM) protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3910011/11No apical meristem protein
LOC_Os03g390503/11No apical meristem protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g39040OsAffx.22944.5.S1_at11/113+21655685..21657943Zinc knuckle family protein
LOC_Os03g39050OsAffx.13243.1.S1_at11/113+21662929..21664370No apical meristem protein
LOC_Os03g39050OsAffx.13243.2.S1_at3/113+21662929..21664370No apical meristem protein
LOC_Os03g39080NANA3+21673375..21674987hypothetical protein
LOC_Os03g39090OsAffx.25428.1.S1_at10/113+21679056..21680225hypothetical protein
LOC_Os03g39100OsAffx.13243.2.S1_at11/113+21680788..21682290No apical meristem protein
LOC_Os03g39100OsAffx.13243.1.S1_at2/113+21680788..21682290No apical meristem protein
LOC_Os03g39110OsAffx.26598.2.S1_x_at9/113+21682968..21685277expressed protein
LOC_Os03g39110Os.27372.1.A1_at6/113+21682968..21685277expressed protein
LOC_Os03g39110OsAffx.26598.2.S1_at6/113+21682968..21685277expressed protein
LOC_Os03g39110Os.21300.2.S1_x_at1/113+21682968..21685277expressed protein
LOC_Os03g39129Os.48549.1.A1_at11/113+21687636..21692645expressed protein
LOC_Os03g39150OsAffx.25429.1.S1_at11/113+21700679..21701734Protein kinase domain containing protein
LOC_Os03g39150Os.17761.1.S1_a_at2/113+21700679..21701734Protein kinase domain containing protein
LOC_Os03g39150Os.17761.2.S1_x_at1/113+21700679..21701734Protein kinase domain containing protein
LOC_Os03g39160Os.56161.1.S1_at11/113+21703226..21706316expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13243.2.S1_at--79--6552Chr03:21681739..21681763 (25 bp)
GATTATTGGCGGGTGTTCCATGGAC
LOC_Os03g39100
OsAffx.13243.2.S1_at--487--8792Chr03:21681752..21681776 (25 bp)
TGTTCCATGGACTTTCCGACCTGAT
LOC_Os03g39100
OsAffx.13243.2.S1_at--367--1772Chr03:21681770..21681794 (25 bp)
ACCTGATCGCGCTGCCAGCAGAGGA
LOC_Os03g39100
OsAffx.13243.2.S1_at--584--1371Chr03:21681911..21681935 (25 bp)
AGAGCTCCTACGACTTGATGGCTGA
LOC_Os03g39100
OsAffx.13243.2.S1_at--1078--10751Chr03:21681925..21681949 (25 bp)
TTGATGGCTGATTCGTCACTGTTAT
LOC_Os03g39100
OsAffx.13243.2.S1_at--325--2551Chr03:21682096..21682120 (25 bp)
AACTCCTCACCGTTGGGCGTCGAGG
LOC_Os03g39100
OsAffx.13243.2.S1_at--382--871Chr03:21682126..21682150 (25 bp)
ATGGCGTTGTCTGATCTTGAGTCCC
LOC_Os03g39100
OsAffx.13243.2.S1_at--1118--10751Chr03:21682142..21682166 (25 bp)
TTGAGTCCCCAGAGAGCATGCCTTT
LOC_Os03g39100
OsAffx.13243.2.S1_at--233--5931Chr03:21682155..21682179 (25 bp)
GAGCATGCCTTTGTCTGATCTAGAG
LOC_Os03g39100
OsAffx.13243.2.S1_at--1110--51Chr03:21682213..21682237 (25 bp)
ATTGACTTCACCACGGATGATACGA
LOC_Os03g39100
OsAffx.13243.2.S1_at--716--711Chr03:21682229..21682253 (25 bp)
ATGATACGAGCTGCCTCGATTTCGA
LOC_Os03g39100
Target Sequence 
GATTATTGGCGGGTGTTCCATGGACTTTCCGACCTGATCGCGCTGCCAGCAGAGGAAGCCGATGCCACCGGTGGTGCAGA
GAGAGAAGAGATCGCTCTGCTCGACGAGGAGCGCTGCCCGCAACCACAGCCCGCTCCTCCTACTGCAGCTCTAGTGCCAC
CACTGCAGGGCCAGAGCTCCTACGACTTGATGGCTGATTCGTCACTGTTATTTGCTGATCTTCCTGGGAGCATCGATGAC
GATGAGCTGCAGCGATCTCTGCGTGCGTCGGACATGCCTGACCAGTTCTTGGCGCAGACAGAGGAAGCCGGTGCCGGTGG
TGGTGGTGGCGCAGCGGCAGCGCTGAACAAGCAGAGCAACTCCTCACCGTTGGGCGTCGAGGTGCCGATGGCGTTGTCTG
ATCTTGAGTCCCCAGAGAGCATGCCTTTGTCTGATCTAGAGTTCCCAGAGAGCATCGATGAAGTGCTTAGTTACATTGAC
TTCACCACGGATGATACGAGCTGCCTCGATTTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13243.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis