Browse Element(s) Details


OsAffx.25429.1.S1_at

Description tigr:9631.m03758
TID=OsAffx.25429.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to protein kinase homolog F24O1.13 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3915011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g39090OsAffx.25428.1.S1_at10/113+21679056..21680225hypothetical protein
LOC_Os03g39100OsAffx.13243.2.S1_at11/113+21680788..21682290No apical meristem protein
LOC_Os03g39100OsAffx.13243.1.S1_at2/113+21680788..21682290No apical meristem protein
LOC_Os03g39110OsAffx.26598.2.S1_x_at9/113+21682968..21685277expressed protein
LOC_Os03g39110Os.27372.1.A1_at6/113+21682968..21685277expressed protein
LOC_Os03g39110OsAffx.26598.2.S1_at6/113+21682968..21685277expressed protein
LOC_Os03g39110Os.21300.2.S1_x_at1/113+21682968..21685277expressed protein
LOC_Os03g39129Os.48549.1.A1_at11/113+21687636..21692645expressed protein
LOC_Os03g39150OsAffx.25429.1.S1_at11/113+21700679..21701734Protein kinase domain containing protein
LOC_Os03g39150Os.17761.1.S1_a_at2/113+21700679..21701734Protein kinase domain containing protein
LOC_Os03g39150Os.17761.2.S1_x_at1/113+21700679..21701734Protein kinase domain containing protein
LOC_Os03g39160Os.56161.1.S1_at11/113+21703226..21706316expressed protein
LOC_Os03g39170OsAffx.13245.1.S1_x_at11/113+21711489..21713402expressed protein
LOC_Os03g39180OsAffx.3442.1.S1_at11/113+21716076..21718606expressed protein
LOC_Os03g39180OsAffx.3442.1.S1_s_at11/113+21716076..21718606expressed protein
LOC_Os03g39190OsAffx.26000.2.S1_at11/113+21719573..21720901hypothetical protein
LOC_Os03g39190OsAffx.26000.1.S1_at1/113+21719573..21720901hypothetical protein
LOC_Os03g39200OsAffx.28610.2.S1_x_at1/113+21722684..21723980hypothetical protein
LOC_Os03g39200OsAffx.21756.5.A1_x_at1/113+21722684..21723980hypothetical protein
LOC_Os03g39200OsAffx.13247.1.S1_at1/113+21722684..21723980hypothetical protein
LOC_Os03g39200Os.7307.3.S1_x_at1/113+21722684..21723980hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25429.1.S1_at--866--3991Chr03:21701134..21701158 (25 bp)
CGTCGCCCGTGGCATGGAGTACCTC
LOC_Os03g39150
OsAffx.25429.1.S1_at--385--8391Chr03:21701273..21701297 (25 bp)
GGCGACAAGTGCTCCTCCAAGGCGG
LOC_Os03g39150
OsAffx.25429.1.S1_at--545--711Chr03:21701324..21701348 (25 bp)
ATGATCCACGACAAGCGCTGCAACC
LOC_Os03g39150
OsAffx.25429.1.S1_at--432--4131Chr03:21701339..21701363 (25 bp)
CGCTGCAACCGCAAGGTGGACGTGT
LOC_Os03g39150
OsAffx.25429.1.S1_at--297--8431Chr03:21701372..21701396 (25 bp)
GGCCTCGTGCTGTGGGAGCTCACCA
LOC_Os03g39150
OsAffx.25429.1.S1_at--562--6691Chr03:21701410..21701434 (25 bp)
GTTCCAGAACTTGAGCCCCGTGCAG
LOC_Os03g39150
OsAffx.25429.1.S1_at--701--2791Chr03:21701513..21701537 (25 bp)
AAGAGGTGCTGGTCCACCGAACCAG
LOC_Os03g39150
OsAffx.25429.1.S1_at--301--6211Chr03:21701539..21701563 (25 bp)
GAGGCGTCCCGAGTTCAAACAGATC
LOC_Os03g39150
OsAffx.25429.1.S1_at--175--1291Chr03:21701559..21701583 (25 bp)
AGATCGTGTCCGTGCTGGAGAGCTA
LOC_Os03g39150
OsAffx.25429.1.S1_at--314--9131Chr03:21701571..21701595 (25 bp)
TGCTGGAGAGCTACGACCGCTGCCT
LOC_Os03g39150
OsAffx.25429.1.S1_at--824--2951Chr03:21701601..21701625 (25 bp)
AAGGCCTGCCAATGGTGGCGCTGCC
LOC_Os03g39150
Target Sequence 
CGTCGCCCGTGGCATGGAGTACCTCCACGCGCGTGGCGTCGTCCACCGCGACCTCAAGCCGGAGAACCTGATGCTCGACG
GCGGCGGGCGCGTCAAGGTCGCCGACCTGGGCACGTCCTGCCTCGAGGCCACCTGCCGCGGCGACAAGTGCTCCTCCAAG
GCGGGCACGTTCCGGTGGATGGCGCCGGAGATGATCCACGACAAGCGCTGCAACCGCAAGGTGGACGTGTACAGCTTCGG
CCTCGTGCTGTGGGAGCTCACCACCTGCCTCGTGCCGTTCCAGAACTTGAGCCCCGTGCAGGTCGCCTACTCCGTCTGCG
ACAGGGACGCCAGGCCGCCGCTCTCGCCGTCGTGCCCGCCGGCCATCAACAGCCTCATCAAGAGGTGCTGGTCCACCGAA
CCAGCGAGGCGTCCCGAGTTCAAACAGATCGTGTCCGTGCTGGAGAGCTACGACCGCTGCCTCCGGCAAGGCCTGCCAAT
GGTGGCGCTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25429.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis