Browse Element(s) Details


OsAffx.3442.1.S1_s_at

Description tigr:9631.m03761
TID=OsAffx.3442.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3918011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g39129Os.48549.1.A1_at11/113+21687636..21692645expressed protein
LOC_Os03g39150OsAffx.25429.1.S1_at11/113+21700679..21701734Protein kinase domain containing protein
LOC_Os03g39150Os.17761.1.S1_a_at2/113+21700679..21701734Protein kinase domain containing protein
LOC_Os03g39150Os.17761.2.S1_x_at1/113+21700679..21701734Protein kinase domain containing protein
LOC_Os03g39160Os.56161.1.S1_at11/113+21703226..21706316expressed protein
LOC_Os03g39170OsAffx.13245.1.S1_x_at11/113+21711489..21713402expressed protein
LOC_Os03g39180OsAffx.3442.1.S1_at11/113+21716076..21718606expressed protein
LOC_Os03g39180OsAffx.3442.1.S1_s_at11/113+21716076..21718606expressed protein
LOC_Os03g39190OsAffx.26000.2.S1_at11/113+21719573..21720901hypothetical protein
LOC_Os03g39190OsAffx.26000.1.S1_at1/113+21719573..21720901hypothetical protein
LOC_Os03g39200OsAffx.28610.2.S1_x_at1/113+21722684..21723980hypothetical protein
LOC_Os03g39200OsAffx.21756.5.A1_x_at1/113+21722684..21723980hypothetical protein
LOC_Os03g39200OsAffx.13247.1.S1_at1/113+21722684..21723980hypothetical protein
LOC_Os03g39200Os.7307.3.S1_x_at1/113+21722684..21723980hypothetical protein
LOC_Os03g39210NANA3+21729961..21734030retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g39220OsAffx.7903.2.S1_x_at1/113+21736961..21737791hypothetical protein
LOC_Os03g39224OsAffx.25431.1.S1_at11/113+21738849..21739673hypothetical protein
LOC_Os03g39230Os.53503.1.S1_at11/113+21739478..21745800OTU-like cysteine protease family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3442.1.S1_s_at--554--471Chr03:21718028..21718052 (25 bp)
ATCTGACTACCGCTACACTATAATG
LOC_Os03g39180
OsAffx.3442.1.S1_s_at--139--6071Chr03:21718097..21718121 (25 bp)
GAGTTTATCTTTTGGTTCCACCTCA
LOC_Os03g39180
OsAffx.3442.1.S1_s_at--492--5051Chr03:21718148..21718172 (25 bp)
GCACAGGAGCAATCAGGCTATGCCT
LOC_Os03g39180
OsAffx.3442.1.S1_s_at--160--8311Chr03:21718163..21718187 (25 bp)
GGCTATGCCTCGTTGGGAAAACCAA
LOC_Os03g39180
OsAffx.3442.1.S1_s_at--537--2351Chr03:21718186..21718210 (25 bp)
AAACCATACCAGGTCCTCCTGTATA
LOC_Os03g39180
OsAffx.3442.1.S1_s_at--389--4291Chr03:21718221..21718245 (25 bp)
CCTCCTCCATATTTTGGTCACTACA
LOC_Os03g39180
OsAffx.3442.1.S1_s_at--530--8591Chr03:21718262..21718286 (25 bp)
TGGTCCACAACCTCGTCGTAATTAA
LOC_Os03g39180
OsAffx.3442.1.S1_s_at--723--7071Chr03:21718383..21718407 (25 bp)
GTAATTTGTTACTTCTCCAGCTTGG
LOC_Os03g39180
OsAffx.3442.1.S1_s_at--151--9231Chr03:21718398..21718422 (25 bp)
TCCAGCTTGGCTGCAATAACTCTTT
LOC_Os03g39180
OsAffx.3442.1.S1_s_at--303--351Chr03:21718413..21718437 (25 bp)
ATAACTCTTTTGGTTGTAGCATGCA
LOC_Os03g39180
OsAffx.3442.1.S1_s_at--1102--8731Chr03:21718451..21718475 (25 bp)
TGTACATGATTCAAGCTGGCAACTT
LOC_Os03g39180
Target Sequence 
ATCTGACTACCGCTACACTATAATGCAAGAAGTCCACAAGTTGATGAGATCTTATGAGAAGAAGAAACGGAGTTTATCTT
TTGGTTCCACCTCAAGTTCACATGAGCACAAGAACAAGAGGCACAGGAGCAATCAGGCTATGCCTCGTTGGGAAAACCAA
ACCATACCAGGTCCTCCTGTATATTTTCCAGTCCCTCCTCCATATTTTGGTCACTACAATCCTTATCACCCCTTTGGTCC
ACAACCTCGTCGTAATTAAGTTGTGGTGATGCTGCTGCTGTGGTGGATTGACTAGAGTGATGAATGGATTGGATGAACAG
AAAAAAGAAAGAAAGTGCACTTTCATAATTTTGCAGTAATTTGTTACTTCTCCAGCTTGGCTGCAATAACTCTTTTGGTT
GTAGCATGCAGATGCACCGTTGTTGTACATGATTCAAGCTGGCAACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3442.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis