Browse Element(s) Details


OsAffx.25431.1.S1_at

Description tigr:9631.m03766
TID=OsAffx.25431.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3922411/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g39180OsAffx.3442.1.S1_at11/113+21716076..21718606expressed protein
LOC_Os03g39180OsAffx.3442.1.S1_s_at11/113+21716076..21718606expressed protein
LOC_Os03g39190OsAffx.26000.2.S1_at11/113+21719573..21720901hypothetical protein
LOC_Os03g39190OsAffx.26000.1.S1_at1/113+21719573..21720901hypothetical protein
LOC_Os03g39200OsAffx.28610.2.S1_x_at1/113+21722684..21723980hypothetical protein
LOC_Os03g39200OsAffx.21756.5.A1_x_at1/113+21722684..21723980hypothetical protein
LOC_Os03g39200OsAffx.13247.1.S1_at1/113+21722684..21723980hypothetical protein
LOC_Os03g39200Os.7307.3.S1_x_at1/113+21722684..21723980hypothetical protein
LOC_Os03g39210NANA3+21729961..21734030retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g39220OsAffx.7903.2.S1_x_at1/113+21736961..21737791hypothetical protein
LOC_Os03g39224OsAffx.25431.1.S1_at11/113+21738849..21739673hypothetical protein
LOC_Os03g39230Os.53503.1.S1_at11/113+21739478..21745800OTU-like cysteine protease family protein, expressed
LOC_Os03g39240OsAffx.7903.2.S1_x_at3/113+21747490..21748332hypothetical protein
LOC_Os03g39250OsAffx.22947.1.S1_x_at3/113+21761343..21765910retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g39250OsAffx.22947.2.S1_x_at1/113+21761343..21765910retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g39250Os.52609.1.S1_at1/113+21761343..21765910retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g39250OsAffx.22947.5.S1_x_at1/113+21761343..21765910retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g39250OsAffx.22947.3.S1_x_at1/113+21761343..21765910retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25431.1.S1_at--177--5451Chr03:21738881..21738905 (25 bp)
GAACCGATATGAACACACACCCAAC
LOC_Os03g39224
OsAffx.25431.1.S1_at--463--3111Chr03:21738911..21738935 (25 bp)
AATTTTTGACAAAGACCCAGATGGG
LOC_Os03g39224
OsAffx.25431.1.S1_at--20--8131Chr03:21738970..21738994 (25 bp)
GGACATTTTTGAGAGCCATTGACTG
LOC_Os03g39224
OsAffx.25431.1.S1_at--890--1371Chr03:21738981..21739005 (25 bp)
AGAGCCATTGACTGCATGTTCGAAT
LOC_Os03g39224
OsAffx.25431.1.S1_at--120--3511Chr03:21738995..21739019 (25 bp)
CATGTTCGAATGTGGGCCGGCGTCA
LOC_Os03g39224
OsAffx.25431.1.S1_at--153--531Chr03:21739029..21739053 (25 bp)
ATCCCCGTGAAACAGCGACGACTTA
LOC_Os03g39224
OsAffx.25431.1.S1_at--350--10791Chr03:21739064..21739088 (25 bp)
TTGTGTAGGACAACGAATTTCGCAT
LOC_Os03g39224
OsAffx.25431.1.S1_at--270--671Chr03:21739087..21739111 (25 bp)
ATGATGGTTGGAACGGCTCGGTCCT
LOC_Os03g39224
OsAffx.25431.1.S1_at--853--531Chr03:21739122..21739146 (25 bp)
ATCGCCATGGAACGAAAGGTCTATG
LOC_Os03g39224
OsAffx.25431.1.S1_at--1088--2891Chr03:21739137..21739161 (25 bp)
AAGGTCTATGAAACTATTGGCCCAT
LOC_Os03g39224
OsAffx.25431.1.S1_at--167--31Chr03:21739152..21739176 (25 bp)
ATTGGCCCATATACTATATTCACCA
LOC_Os03g39224
Target Sequence 
GAACCGATATGAACACACACCCAACGAAGGAATTTTTGACAAAGACCCAGATGGGGGAGCACAGAGAGTGATGGGGGGTA
TTGGGGGATGGACATTTTTGAGAGCCATTGACTGCATGTTCGAATGTGGGCCGGCGTCACCAAACGGCATCCCCGTGAAA
CAGCGACGACTTAAGAAGGAGATTTGTGTAGGACAACGAATTTCGCATGATGGTTGGAACGGCTCGGTCCTATCGCTGCA
CATCGCCATGGAACGAAAGGTCTATGAAACTATTGGCCCATATACTATATTCACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25431.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis