Browse Element(s) Details


Os.53503.1.S1_at

Description gb:AK072986.1
DB_XREF= gi:32983009
TID=Os.53503.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53503 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033000K10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033000K10, full insert sequence.
FL= gb:AK072986.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3923011/11OTU-like cysteine protease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g39180OsAffx.3442.1.S1_at11/113+21716076..21718606expressed protein
LOC_Os03g39180OsAffx.3442.1.S1_s_at11/113+21716076..21718606expressed protein
LOC_Os03g39190OsAffx.26000.2.S1_at11/113+21719573..21720901hypothetical protein
LOC_Os03g39190OsAffx.26000.1.S1_at1/113+21719573..21720901hypothetical protein
LOC_Os03g39200OsAffx.28610.2.S1_x_at1/113+21722684..21723980hypothetical protein
LOC_Os03g39200OsAffx.21756.5.A1_x_at1/113+21722684..21723980hypothetical protein
LOC_Os03g39200OsAffx.13247.1.S1_at1/113+21722684..21723980hypothetical protein
LOC_Os03g39200Os.7307.3.S1_x_at1/113+21722684..21723980hypothetical protein
LOC_Os03g39210NANA3+21729961..21734030retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g39220OsAffx.7903.2.S1_x_at1/113+21736961..21737791hypothetical protein
LOC_Os03g39224OsAffx.25431.1.S1_at11/113+21738849..21739673hypothetical protein
LOC_Os03g39230Os.53503.1.S1_at11/113+21739478..21745800OTU-like cysteine protease family protein, expressed
LOC_Os03g39240OsAffx.7903.2.S1_x_at3/113+21747490..21748332hypothetical protein
LOC_Os03g39250OsAffx.22947.1.S1_x_at3/113+21761343..21765910retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g39250OsAffx.22947.2.S1_x_at1/113+21761343..21765910retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g39250Os.52609.1.S1_at1/113+21761343..21765910retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g39250OsAffx.22947.5.S1_x_at1/113+21761343..21765910retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g39250OsAffx.22947.3.S1_x_at1/113+21761343..21765910retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g39270OsAffx.13248.1.S1_at11/113+21770766..21772793hypothetical protein
LOC_Os03g39270Os.54506.1.S1_at11/113+21770766..21772793hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53503.1.S1_at--1114--5651Chr03:21740750..21740861 (25 bp)
GACAGGAATTGCCAGTTCCGAGCAT
LOC_Os03g39230
Os.53503.1.S1_at--710--1271Chr03:21740721..21740745 (25 bp)
AGATCAAATGTACCACACCACCGAA
LOC_Os03g39230
Os.53503.1.S1_at--104--2171Chr03:21740697..21740721 (25 bp)
ACACCACAGGTTTGTTCGTCAGCAA
LOC_Os03g39230
Os.53503.1.S1_at--79--4272Chr03:21740565..21740589 (25 bp)
CCTGAAATTTATGCGGGTTATGTCC
LOC_Os03g39230
Os.53503.1.S1_at--797--7711Chr03:21740404..21740428 (25 bp)
GGGTGACCATGTTACGCTTCAGGCT
LOC_Os03g39230
Os.53503.1.S1_at--998--7031Chr03:21740055..21740079 (25 bp)
GTAAAGATAACCCTGCTGACATCAT
LOC_Os03g39230
Os.53503.1.S1_at--622--4751Chr03:21740041..21740065 (25 bp)
GCTGACATCATGCAGAGATACCTTT
LOC_Os03g39230
Os.53503.1.S1_at--1034--10551Chr03:21740006..21740030 (25 bp)
TTCTTCCTGCTGACCAGAAACCAAA
LOC_Os03g39230
Os.53503.1.S1_at--32--4751Chr03:21739807..21739831 (25 bp)
GCTGAGGTGCACTACGATTCGGTAT
LOC_Os03g39230
Os.53503.1.S1_at--930--2611Chr03:21739677..21739700 (24 bp)
AAGCCAGTTGATCCAGTTCCGTTAC
LOC_Os03g39230
Os.53503.1.S1_at--524--10652Chr11:15905308..15905327 (20 bp)
TTCCGTTACAACCTAGTCGTCGGCG
NONE
Target Sequence 
GACAGGAATTGCCAGTTCCGAGCATTGTCAGATCAAATGTACCACACCACCGAACACCACAGGTTTGTTCGTCAGCAAGT
AGTGAAACAGCTTGAGTCTTATCCTGAAATTTATGCGGGTTATGTCCCTATGGATTATAGGGAATATCTGAAGAAGATGA
CAGAGGATGGAGAGTGGGGTGACCATGTTACGCTTCAGGCTGCTGCCGACTTGTATGGTGTAAAGATAACCCTGCTGACA
TCATGCAGAGATACCTTTTACATTGAAGTTCTTCCTGCTGACCAGAAACCAAAAGGAGAGATATGCATTAGTTTTTGGGC
TGAGGTGCACTACGATTCGGTATATGCAGAAAAAGCCAGTTGATCCAGTTCCGTTACAACCTAGTCGTCGGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53503.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis