Browse Element(s) Details


OsAffx.3442.1.S1_at

Description tigr:9631.m03761
TID=OsAffx.3442.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3918011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g39129Os.48549.1.A1_at11/113+21687636..21692645expressed protein
LOC_Os03g39150OsAffx.25429.1.S1_at11/113+21700679..21701734Protein kinase domain containing protein
LOC_Os03g39150Os.17761.1.S1_a_at2/113+21700679..21701734Protein kinase domain containing protein
LOC_Os03g39150Os.17761.2.S1_x_at1/113+21700679..21701734Protein kinase domain containing protein
LOC_Os03g39160Os.56161.1.S1_at11/113+21703226..21706316expressed protein
LOC_Os03g39170OsAffx.13245.1.S1_x_at11/113+21711489..21713402expressed protein
LOC_Os03g39180OsAffx.3442.1.S1_at11/113+21716076..21718606expressed protein
LOC_Os03g39180OsAffx.3442.1.S1_s_at11/113+21716076..21718606expressed protein
LOC_Os03g39190OsAffx.26000.2.S1_at11/113+21719573..21720901hypothetical protein
LOC_Os03g39190OsAffx.26000.1.S1_at1/113+21719573..21720901hypothetical protein
LOC_Os03g39200OsAffx.28610.2.S1_x_at1/113+21722684..21723980hypothetical protein
LOC_Os03g39200OsAffx.21756.5.A1_x_at1/113+21722684..21723980hypothetical protein
LOC_Os03g39200OsAffx.13247.1.S1_at1/113+21722684..21723980hypothetical protein
LOC_Os03g39200Os.7307.3.S1_x_at1/113+21722684..21723980hypothetical protein
LOC_Os03g39210NANA3+21729961..21734030retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g39220OsAffx.7903.2.S1_x_at1/113+21736961..21737791hypothetical protein
LOC_Os03g39224OsAffx.25431.1.S1_at11/113+21738849..21739673hypothetical protein
LOC_Os03g39230Os.53503.1.S1_at11/113+21739478..21745800OTU-like cysteine protease family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3442.1.S1_at--1118--3171Chr03:21718006..21718030 (25 bp)
CAATTGAAGCGCATGACAGTGGATC
LOC_Os03g39180
OsAffx.3442.1.S1_at--119--3171Chr03:21718007..21718031 (25 bp)
AATTGAAGCGCATGACAGTGGATCT
LOC_Os03g39180
OsAffx.3442.1.S1_at--985--51Chr03:21718008..21718032 (25 bp)
ATTGAAGCGCATGACAGTGGATCTG
LOC_Os03g39180
OsAffx.3442.1.S1_at--351--10751Chr03:21718009..21718033 (25 bp)
TTGAAGCGCATGACAGTGGATCTGA
LOC_Os03g39180
OsAffx.3442.1.S1_at--704--5411Chr03:21718011..21718035 (25 bp)
GAAGCGCATGACAGTGGATCTGACT
LOC_Os03g39180
OsAffx.3442.1.S1_at--750--2671Chr03:21718012..21718036 (25 bp)
AAGCGCATGACAGTGGATCTGACTA
LOC_Os03g39180
OsAffx.3442.1.S1_at--1096--1631Chr03:21718013..21718037 (25 bp)
AGCGCATGACAGTGGATCTGACTAC
LOC_Os03g39180
OsAffx.3442.1.S1_at--560--4571Chr03:21718014..21718038 (25 bp)
GCGCATGACAGTGGATCTGACTACC
LOC_Os03g39180
OsAffx.3442.1.S1_at--853--4111Chr03:21718015..21718039 (25 bp)
CGCATGACAGTGGATCTGACTACCG
LOC_Os03g39180
OsAffx.3442.1.S1_at--585--4991Chr03:21718016..21718040 (25 bp)
GCATGACAGTGGATCTGACTACCGC
LOC_Os03g39180
OsAffx.3442.1.S1_at--479--3511Chr03:21718017..21718041 (25 bp)
CATGACAGTGGATCTGACTACCGCT
LOC_Os03g39180
Target Sequence 
CAATTGAAGCGCATGACAGTGGATCTGACTACCGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3442.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis