Browse Element(s) Details


Os.48549.1.A1_at

Description gb:AK120221.1
DB_XREF= gi:37989844
TID=Os.48549.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48549 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013041G13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013041G13, full insert sequence.
FL= gb:AK120221.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3912911/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g39050OsAffx.13243.1.S1_at11/113+21662929..21664370No apical meristem protein
LOC_Os03g39050OsAffx.13243.2.S1_at3/113+21662929..21664370No apical meristem protein
LOC_Os03g39080NANA3+21673375..21674987hypothetical protein
LOC_Os03g39090OsAffx.25428.1.S1_at10/113+21679056..21680225hypothetical protein
LOC_Os03g39100OsAffx.13243.2.S1_at11/113+21680788..21682290No apical meristem protein
LOC_Os03g39100OsAffx.13243.1.S1_at2/113+21680788..21682290No apical meristem protein
LOC_Os03g39110OsAffx.26598.2.S1_x_at9/113+21682968..21685277expressed protein
LOC_Os03g39110Os.27372.1.A1_at6/113+21682968..21685277expressed protein
LOC_Os03g39110OsAffx.26598.2.S1_at6/113+21682968..21685277expressed protein
LOC_Os03g39110Os.21300.2.S1_x_at1/113+21682968..21685277expressed protein
LOC_Os03g39129Os.48549.1.A1_at11/113+21687636..21692645expressed protein
LOC_Os03g39150OsAffx.25429.1.S1_at11/113+21700679..21701734Protein kinase domain containing protein
LOC_Os03g39150Os.17761.1.S1_a_at2/113+21700679..21701734Protein kinase domain containing protein
LOC_Os03g39150Os.17761.2.S1_x_at1/113+21700679..21701734Protein kinase domain containing protein
LOC_Os03g39160Os.56161.1.S1_at11/113+21703226..21706316expressed protein
LOC_Os03g39170OsAffx.13245.1.S1_x_at11/113+21711489..21713402expressed protein
LOC_Os03g39180OsAffx.3442.1.S1_at11/113+21716076..21718606expressed protein
LOC_Os03g39180OsAffx.3442.1.S1_s_at11/113+21716076..21718606expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48549.1.A1_at--109--251Chr03:21692185..21692209 (25 bp)
ATATCACCTATGGTTCCGCATATTG
LOC_Os03g39129
Os.48549.1.A1_at--271--6631Chr03:21692224..21692248 (25 bp)
GTTGGGCATTCACCATATGCTGCAA
LOC_Os03g39129
Os.48549.1.A1_at--397--591Chr03:21692248..21692272 (25 bp)
ATGCCTATATCTCACACTTATGCTG
LOC_Os03g39129
Os.48549.1.A1_at--769--2251Chr03:21692292..21692316 (25 bp)
AAATCAGAGCGCTGCATTTGCACAA
LOC_Os03g39129
Os.48549.1.A1_at--1025--6811Chr03:21692346..21692370 (25 bp)
GTTTAATCCCCAACAGCCTAATTAT
LOC_Os03g39129
Os.48549.1.A1_at--697--6731Chr03:21692391..21692415 (25 bp)
GTTCTATCCCAGGTAGCACTTGCTG
LOC_Os03g39129
Os.48549.1.A1_at--718--31Chr03:21692476..21692500 (25 bp)
ATTGTGTTGGCTCAATTGCCTCATG
LOC_Os03g39129
Os.48549.1.A1_at--895--3131Chr03:21692538..21692562 (25 bp)
AATTTTGGCCATTCTCTTTGTTGTA
LOC_Os03g39129
Os.48549.1.A1_at--1062--1551Chr03:21692565..21692589 (25 bp)
AGCTTTTCAATAGTTCTGCCCTTTG
LOC_Os03g39129
Os.48549.1.A1_at--243--4511Chr03:21692582..21692606 (25 bp)
GCCCTTTGAAGGTGCAGCTTGTCGA
LOC_Os03g39129
Os.48549.1.A1_at--290--5671Chr03:21692621..21692645 (25 bp)
GACATGCTCCTTGTTTCGTTTGTTA
LOC_Os03g39129
Target Sequence 
ATATCACCTATGGTTCCGCATATTGTGCAGGTTGATTCTGTTGGGCATTCACCATATGCTGCAATGCCTATATCTCACAC
TTATGCTGCCCAACTAGGNTGGCCTGGAAATCAGAGCGCTGCATTTGCACAAAATGTTGGAGTTTCTCAATTTATGGGTA
TGTTTAATCCCCAACAGCCTAATTATCCCTTCTACCGTCATCCACCGTTCTATCCCAGGTAGCACTTGCTGCAATGGGTT
GTTGAGTAAACTAGAGAAAGATATAGATGCTTACAGGAGTTTTCCTCTTGAATTGTGTTGGCTCAATTGCCTCATGTTGT
GTTGGACATTTATTTACATTAACATGTATATACAATTTTGGCCATTCTCTTTGTTGTAATAGCTTTTCAATAGTTCTGCC
CTTTGAAGGTGCAGCTTGTCGATTTAAGTGACAGTTGACATGCTCCTTGTTTCGTTTGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48549.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis