Browse Element(s) Details


Os.27372.1.A1_at

Description gb:CB668182
DB_XREF= gi:29671907
DB_XREF=OSJNEd15O14.r
CLONE=OSJNEd15O14
TID=Os.27372.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.27372 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_177679.1 (A.thaliana) protease, putative (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g391106/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g39050OsAffx.13243.1.S1_at11/113+21662929..21664370No apical meristem protein
LOC_Os03g39050OsAffx.13243.2.S1_at3/113+21662929..21664370No apical meristem protein
LOC_Os03g39080NANA3+21673375..21674987hypothetical protein
LOC_Os03g39090OsAffx.25428.1.S1_at10/113+21679056..21680225hypothetical protein
LOC_Os03g39100OsAffx.13243.2.S1_at11/113+21680788..21682290No apical meristem protein
LOC_Os03g39100OsAffx.13243.1.S1_at2/113+21680788..21682290No apical meristem protein
LOC_Os03g39110OsAffx.26598.2.S1_x_at9/113+21682968..21685277expressed protein
LOC_Os03g39110Os.27372.1.A1_at6/113+21682968..21685277expressed protein
LOC_Os03g39110OsAffx.26598.2.S1_at6/113+21682968..21685277expressed protein
LOC_Os03g39110Os.21300.2.S1_x_at1/113+21682968..21685277expressed protein
LOC_Os03g39129Os.48549.1.A1_at11/113+21687636..21692645expressed protein
LOC_Os03g39150OsAffx.25429.1.S1_at11/113+21700679..21701734Protein kinase domain containing protein
LOC_Os03g39150Os.17761.1.S1_a_at2/113+21700679..21701734Protein kinase domain containing protein
LOC_Os03g39150Os.17761.2.S1_x_at1/113+21700679..21701734Protein kinase domain containing protein
LOC_Os03g39160Os.56161.1.S1_at11/113+21703226..21706316expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27372.1.A1_at--1045--7931NONE
GGATAGTCATTTGGCTAGGATTTAC
NONE
Os.27372.1.A1_at--797--7931NONE
GGATTTACAAGACTTTTGCTCACTT
NONE
Os.27372.1.A1_at--965--9751Chr03:21683236..21683260 (25 bp)
TAATCAGTTTTGCAGCATCGTTGTA
LOC_Os03g39110
Os.27372.1.A1_at--102--5071Chr03:21683225..21683249 (25 bp)
GCAGCATCGTTGTATCGTGTTGCAT
LOC_Os03g39110
Os.27372.1.A1_at--1024--7411Chr03:21683209..21683233 (25 bp)
GTGTTGCATTGGAGCCAACAAAGTT
LOC_Os03g39110
Os.27372.1.A1_at--1157--6911Chr03:21683118..21683142 (25 bp)
GTAGGACGTACTTGTCAGTATACAT
LOC_Os03g39110
Os.27372.1.A1_at--529--6891Chr03:21683101..21683125 (25 bp)
GTATACATCCTAGTACTGACATAAG
LOC_Os03g39110
Os.27372.1.A1_at--993--7611NONE
GGGAACTGCAGCTTTGTTTTGTAGC
NONE
Os.27372.1.A1_at--412--5051NONE
GCAGCTTTGTTTTGTAGCTCCTAGC
NONE
Os.27372.1.A1_at--102--6971NONE
GTAGCTCCTAGCATGTTGGTTTTAT
NONE
Os.27372.1.A1_at--172--7531Chr03:21682997..21683020 (24 bp)
GTGGCACTCATGTAGGTGACATTCC
LOC_Os03g39110
Target Sequence 
GGATAGTCATTTGGCTAGGATTTACAAGACTTTTGCTCACTTTTTTTCAAGAACAAGCACTTCCNCAGGACCTCAGTTTG
NTGTTAATCAGTTTTGAAGGAATCATTCCNTTAATCAGTTTTGCAGCATCGTTGTATCGTGTTGCATTGGAGCCAACAAA
GTTGTTGCAAATTTTTGAAGATGCTCCATGTTTTTGTTTTGTACAATTTTCAGTAAATGTAAATATCATGTAGGACGTAC
TTGTCAGTATACATCCTAGTACTGACATAAGTTAGGGGAACTGCAGCTTTGTTTTGTAGCTCCTAGCATGTTGGTTTTAT
AACTGTATGCAAGAAAAGTGCTAGGGTGTCGGTGGCACTCATGTAGGTGACATTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27372.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis