Browse Element(s) Details


Os.15050.1.S1_at

Description gb:AK067968.1
DB_XREF= gi:32977986
TID=Os.15050.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15050 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013121G22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013121G22, full insert sequence.
FL= gb:AK067968.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3897011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g38930Os.16359.1.S1_at11/113+21577574..21583302expressed protein
LOC_Os03g38940Os.52221.1.S1_at11/113+21585701..21588673expressed protein
LOC_Os03g38950Os.9767.1.S1_at11/113+21589502..21591865expressed protein
LOC_Os03g38960Os.14000.1.S1_at11/113+21591963..21595861DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide, putative, expressed
LOC_Os03g38970Os.15050.1.S1_at11/113+21602030..21614580expressed protein
LOC_Os03g38980Os.27850.1.S1_at11/113+21619910..21628223Lysyl-tRNA synthetase, putative, expressed
LOC_Os03g38990Os.9254.1.S1_at11/113+21628349..21635002DNA helicase family protein, expressed
LOC_Os03g39000Os.8893.1.S1_at10/113+21636579..21639637Inositol monophosphatase 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15050.1.S1_at--247--771Chr03:21603474..21603494 (21 bp)
ATGGGCACTAAAGCTTTGAGGCGGT
LOC_Os03g38970
Os.15050.1.S1_at--311--10771Chr03:21602554..21602575 (22 bp)
TTGAGGCGGTACTTCTTCCTGATCA
LOC_Os03g38970
Os.15050.1.S1_at--212--9931Chr03:21602512..21602536 (25 bp)
TACTGTTCATCTTTGCGTGAGCCAA
LOC_Os03g38970
Os.15050.1.S1_at--533--3671Chr03:21602502..21602526 (25 bp)
CTTTGCGTGAGCCAACATTTGCATC
LOC_Os03g38970
Os.15050.1.S1_at--125--9071Chr03:21602483..21602507 (25 bp)
TGCATCATGGATGGAGGCCAGGCCT
LOC_Os03g38970
Os.15050.1.S1_at--711--9491Chr03:21602402..21602426 (25 bp)
TCTCCATTGGATCATTGAACAGCTT
LOC_Os03g38970
Os.15050.1.S1_at--246--2151Chr03:21602384..21602408 (25 bp)
ACAGCTTGCTAGTTCGTGGACTTGA
LOC_Os03g38970
Os.15050.1.S1_at--802--6711Chr03:21602296..21602320 (25 bp)
GTTCGTAGGACATTTTACCAGACTT
LOC_Os03g38970
Os.15050.1.S1_at--762--10131Chr03:21602138..21602162 (25 bp)
TATGCATATCCTTGTTCTGTCTGCT
LOC_Os03g38970
Os.15050.1.S1_at--455--9471Chr03:21602123..21602147 (25 bp)
TCTGTCTGCTTCTTTATCAGTAACT
LOC_Os03g38970
Os.15050.1.S1_at--23--2571Chr03:21602095..21602119 (25 bp)
AACTGTTGCCACATACGGATATTGT
LOC_Os03g38970
Target Sequence 
ATGGGCACTAAAGCTTTGAGGCGGTACTTCTTCCTGATCACCTTCCGATCCTACCTCTACTGTTCATCTTTGCGTGAGCC
AACATTTGCATCATGGATGGAGGCCAGGCCTGAACTTGGCCATCNCTGCGATAATCTAAAACTGGATAAATAGATNTATG
AGTTANTCTCTCCATTGGATCATTGAACAGCTTGCTAGTTCGTGGACTTGAGGAAGATAGGGCTGAAATAATTTCTTAGG
AAGGAGGAAACATAAGAACCGGCAGAAAGGAGTAGTTCGTAGGACATTTTACCAGACTTGTTGGCGCCNATTGGCACCNG
CAAGGATGTATATATAATTCCGAGGTTAAATTGTAGAGGAACATAGCTGAGGTTACTAGTTTTGTTTTTCTCCGTTTATT
TTGCAATAAATGTTATGTAATTTGTTTATATATATGCATATCCTTGTTCTGTCTGCTTCTTTATCAGTAACTCAAAACTG
TTGCCACATACGGATATTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15050.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis