Browse Element(s) Details


OsAffx.3439.1.S1_at

Description tigr:9631.m03737
TID=OsAffx.3439.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g389208/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g38870OsAffx.25425.1.S1_at11/113+21554307..21555422Dof domain, zinc finger family protein, expressed
LOC_Os03g38880OsAffx.13241.1.S1_at10/113+21558907..21562361retrotransposon, putative, centromere-specific
LOC_Os03g38880Os.54774.1.S1_x_at1/113+21558907..21562361retrotransposon, putative, centromere-specific
LOC_Os03g38890NANA3+21563996..21564628retrotransposon, putative, centromere-specific
LOC_Os03g38900NANA3+21567081..21567700hypothetical protein
LOC_Os03g38920OsAffx.3439.1.S1_at8/113+21573782..21576021hypothetical protein
LOC_Os03g38930Os.16359.1.S1_at11/113+21577574..21583302expressed protein
LOC_Os03g38940Os.52221.1.S1_at11/113+21585701..21588673expressed protein
LOC_Os03g38950Os.9767.1.S1_at11/113+21589502..21591865expressed protein
LOC_Os03g38960Os.14000.1.S1_at11/113+21591963..21595861DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3439.1.S1_at--750--1731Chr03:21575937..21575961 (25 bp)
ACCATCCTTCGGGTTTGTGATATGA
LOC_Os03g38920
OsAffx.3439.1.S1_at--136--8471Chr03:21575772..21575929 (25 bp)
TGGCCCGACCTTACAATATACCTTG
LOC_Os03g38920
OsAffx.3439.1.S1_at--467--8274Chr06:1087155..1087175 (21 bp)
GGCAGGCCTACAACAATTCAAGGGT
NONE
OsAffx.3439.1.S1_at--512--2451NONE
AACAATTCAAGGGTGCGCGACCTGG
NONE
OsAffx.3439.1.S1_at--430--1751Chr03:21574780..21574804 (25 bp)
ACCTCTTCAGCGTTTTCGATGGCCA
LOC_Os03g38920
OsAffx.3439.1.S1_at--577--1631Chr03:21574772..21574796 (25 bp)
AGCGTTTTCGATGGCCACGGCAACG
LOC_Os03g38920
OsAffx.3439.1.S1_at--877--3851Chr03:21574588..21574612 (25 bp)
CTGAGGATACAGATGGTGCCGCACG
LOC_Os03g38920
OsAffx.3439.1.S1_at--825--6251NONE
GATGGTGCCGCACGGATGTCTCACA
NONE
OsAffx.3439.1.S1_at--274--771NONE
ATGTCTCACACACGGAGCGGCTCGA
NONE
OsAffx.3439.1.S1_at--989--9091Chr03:21573941..21573965 (25 bp)
TGCTCTCCTGCAGGACGCAAGGCTA
LOC_Os03g38920
OsAffx.3439.1.S1_at--853--8951Chr03:21573866..21573890 (25 bp)
TGACAACGGCGGTAGCGGCAAGCTG
LOC_Os03g38920
Target Sequence 
ACCATCCTTCGGGTTTGTGATATGAGTAGGGGTGGCCCGACCTTACAATATACCTTGCAGGGGCAGGCCTACAACAATTC
AAGGGTGCGCGACCTGGACGGGCTGGGCCTCGACGCCGACGCACTCCGGCTGCCGGCCCACCTCTTCAGCGTTTTCGATG
GCCACGGCAACGCCGAGGTGGTGAACTACTGCCGTGAAAGGATCCACGTCGTGTTGAGCGAGGAGCTGAGGATACAGATG
GTGCCGCACGGATGTCTCACACACGGAGCGGCTCGAGCTCTGGCACCGCCTCATCCAGCTGCTCTCCTGCAGGACGCAAG
GCTAGGCGGAGGCAAGGCGGAGGCGGTCGCGCGCGAGGCGGCGGCGGCGCTTCGTGACAACGGCGGTAGCGGCAAGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3439.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis