Browse Element(s) Details


OsAffx.25425.1.S1_at

Description tigr:9631.m03732
TID=OsAffx.25425.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to dof zinc finger protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3887011/11Dof domain, zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g38850Os.46012.2.S1_x_at6/113+21527603..21535195retrotransposon protein, putative, unclassified
LOC_Os03g38850Os.27088.1.A1_x_at5/113+21527603..21535195retrotransposon protein, putative, unclassified
LOC_Os03g38850Os.46012.3.S1_x_at4/113+21527603..21535195retrotransposon protein, putative, unclassified
LOC_Os03g38850OsAffx.10222.1.S1_x_at1/113+21527603..21535195retrotransposon protein, putative, unclassified
LOC_Os03g38860OsAffx.25424.1.S1_at9/113+21540453..21542121hypothetical protein
LOC_Os03g38864NANA3+21542720..21543520hypothetical protein
LOC_Os03g38870OsAffx.25425.1.S1_at11/113+21554307..21555422Dof domain, zinc finger family protein, expressed
LOC_Os03g38880OsAffx.13241.1.S1_at10/113+21558907..21562361retrotransposon, putative, centromere-specific
LOC_Os03g38880Os.54774.1.S1_x_at1/113+21558907..21562361retrotransposon, putative, centromere-specific
LOC_Os03g38890NANA3+21563996..21564628retrotransposon, putative, centromere-specific
LOC_Os03g38900NANA3+21567081..21567700hypothetical protein
LOC_Os03g38920OsAffx.3439.1.S1_at8/113+21573782..21576021hypothetical protein
LOC_Os03g38930Os.16359.1.S1_at11/113+21577574..21583302expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25425.1.S1_at--670--3931Chr03:21554861..21554885 (25 bp)
CGGCGTCGGGCATCATCAGTACGTG
LOC_Os03g38870
OsAffx.25425.1.S1_at--43--8291Chr03:21554869..21554893 (25 bp)
GGCATCATCAGTACGTGCCGTTCGG
LOC_Os03g38870
OsAffx.25425.1.S1_at--390--1151Chr03:21554986..21555010 (25 bp)
AGTCGCTCAGCTTCATCAACCAGGA
LOC_Os03g38870
OsAffx.25425.1.S1_at--797--2631Chr03:21555003..21555027 (25 bp)
AACCAGGACCTGCACTGGAAGCTGC
LOC_Os03g38870
OsAffx.25425.1.S1_at--1001--5051Chr03:21555029..21555053 (25 bp)
GCAGCAGAGGCTCGCCACCATGTTC
LOC_Os03g38870
OsAffx.25425.1.S1_at--740--2651Chr03:21555127..21555151 (25 bp)
AAGCCACAGCGTCAGGGCATGCTGC
LOC_Os03g38870
OsAffx.25425.1.S1_at--952--7711Chr03:21555162..21555186 (25 bp)
GGTGGCGCCTTCATGCACATGGCTG
LOC_Os03g38870
OsAffx.25425.1.S1_at--965--9611Chr03:21555172..21555196 (25 bp)
TCATGCACATGGCTGGTAGTGTTCC
LOC_Os03g38870
OsAffx.25425.1.S1_at--354--851Chr03:21555237..21555261 (25 bp)
ATGGACAGCTGCTCCTACGGGCTCC
LOC_Os03g38870
OsAffx.25425.1.S1_at--972--1711Chr03:21555303..21555327 (25 bp)
ACCAGCAGTAACCTCAACAGCGGCG
LOC_Os03g38870
OsAffx.25425.1.S1_at--193--6951Chr03:21555334..21555358 (25 bp)
GTAGCGGCGGCGATGATAACGCCAC
LOC_Os03g38870
Target Sequence 
CGGCGTCGGGCATCATCAGTACGTGCCGTTCGGGGAGTGGCCCTCGGGGGACATTGCCGGCGGCAACGCGGTGAACGGCG
GCGGCGGCCACGGCGCGGTGAGCAGCACCATCGCGTCGTCCATCGAGTCGCTCAGCTTCATCAACCAGGACCTGCACTGG
AAGCTGCAGCAGCAGAGGCTCGCCACCATGTTCCTCGGCCCGCCGGGCTCCGCCTCCGCCGCCGCCGCCGCCGCCCAGGC
CAACGACGGTGGCGGCAACGGCGCCCAAGCCACAGCGTCAGGGCATGCTGCCGGAGGAGGCGGTGGCGCCTTCATGCACA
TGGCTGGTAGTGTTCCCAGCATGGAGGCGGCCATGCCGTCGGCGACGTCGTGGTTCATGGACAGCTGCTCCTACGGGCTC
CCTTCCCCACCGCCGCCTGCCACTGCCGCCGTGGCCGCCACCACCAGCAGTAACCTCAACAGCGGCGGCCGGAGTAGCGG
CGGCGATGATAACGCCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25425.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis