Browse Element(s) Details


OsAffx.25424.1.S1_at

Description tigr:9631.m03731
TID=OsAffx.25424.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g388609/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g38820Os.35344.18.S1_x_at8/113+21510251..21515512transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g38820Os.35344.3.S1_x_at7/113+21510251..21515512transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g38820OsAffx.22940.5.S1_x_at2/113+21510251..21515512transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g38830Os.54774.1.S1_x_at2/113+21520137..21522348retrotransposon, putative, centromere-specific
LOC_Os03g38830Os.54774.1.S1_at2/113+21520137..21522348retrotransposon, putative, centromere-specific
LOC_Os03g38840Os.54774.1.S1_x_at2/113+21524034..21524856retrotransposon, putative, centromere-specific
LOC_Os03g38840Os.54774.1.S1_at2/113+21524034..21524856retrotransposon, putative, centromere-specific
LOC_Os03g38850Os.46012.2.S1_x_at6/113+21527603..21535195retrotransposon protein, putative, unclassified
LOC_Os03g38850Os.27088.1.A1_x_at5/113+21527603..21535195retrotransposon protein, putative, unclassified
LOC_Os03g38850Os.46012.3.S1_x_at4/113+21527603..21535195retrotransposon protein, putative, unclassified
LOC_Os03g38850OsAffx.10222.1.S1_x_at1/113+21527603..21535195retrotransposon protein, putative, unclassified
LOC_Os03g38860OsAffx.25424.1.S1_at9/113+21540453..21542121hypothetical protein
LOC_Os03g38864NANA3+21542720..21543520hypothetical protein
LOC_Os03g38870OsAffx.25425.1.S1_at11/113+21554307..21555422Dof domain, zinc finger family protein, expressed
LOC_Os03g38880OsAffx.13241.1.S1_at10/113+21558907..21562361retrotransposon, putative, centromere-specific
LOC_Os03g38880Os.54774.1.S1_x_at1/113+21558907..21562361retrotransposon, putative, centromere-specific
LOC_Os03g38890NANA3+21563996..21564628retrotransposon, putative, centromere-specific
LOC_Os03g38900NANA3+21567081..21567700hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25424.1.S1_at--722--1931Chr03:21540496..21540520 (25 bp)
ACGGCATGACCATCCCGATCGAGCT
LOC_Os03g38860
OsAffx.25424.1.S1_at--1100--5891Chr03:21540516..21540540 (25 bp)
GAGCTCTCCAACCACAAGACCGGAT
LOC_Os03g38860
OsAffx.25424.1.S1_at--260--2191Chr03:21540529..21540553 (25 bp)
ACAAGACCGGATTGACGAACTCCTC
LOC_Os03g38860
OsAffx.25424.1.S1_at--153--951Chr03:21540790..21540814 (25 bp)
AGGAAGAGGGCCGAGCTCTGCTGCA
LOC_Os03g38860
OsAffx.25424.1.S1_at--337--5911Chr03:21540802..21540826 (25 bp)
GAGCTCTGCTGCACCCGACGAGGCG
LOC_Os03g38860
OsAffx.25424.1.S1_at--837--6211Chr03:21540821..21540845 (25 bp)
GAGGCGACGACGCACACTCATGAGC
LOC_Os03g38860
OsAffx.25424.1.S1_at--194--5131Chr03:21540832..21540852 (21 bp)
GCACACTCATGAGCCCGGGTGAACA
LOC_Os03g38860
OsAffx.25424.1.S1_at--835--651NONE
ATGAGCCCGGGTGAACAGCCACAAC
NONE
OsAffx.25424.1.S1_at--1098--4511NONE
GCCCGGGTGAACAGCCACAACACAT
NONE
OsAffx.25424.1.S1_at--1118--3292Chr07:19974251..19974275 (25 bp)
CACAACACATTCTGGAGCTTGAGAA
NONE
OsAffx.25424.1.S1_at--562--2231Chr03:21542059..21542083 (25 bp)
AAATTGTTAGAGGAACAGGCTGTTT
LOC_Os03g38860
Target Sequence 
ACGGCATGACCATCCCGATCGAGCTCTCCAACCACAAGACCGGATTGACGAACTCCTCCCGCCGGCAGTCCCTGACGAGG
CGCCCAAGGCCGTCGTGCCCTAGCCGAGGCCGCTTCCTCGCCGCCCCAGCTGCCAATGCCGCCTCCTCACCGCCCCTATT
CGGCATCACATCCTCGCTGGCCCAAGCCGTCGACCGTCGTCGGCTCGTCGCCTCCTCCGCGCTCTGTCACCATCCGCGCC
GAGTCGGGACTGCCCGCGCCTGCGGGATAGGGGGTGGCCGCACGGCGGGAGAGGAGGAAGAGGGCCGAGCTCTGCTGCAC
CCGACGAGGCGACGACGCACACTCATGAGCCCGGGTGAACAGCCACAACACATTCTGGAGCTTGAGAAATTGTTAGAGGA
ACAGGCTGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25424.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis