Browse Element(s) Details


Os.52246.1.S1_at

Description gb:AK065859.1
DB_XREF= gi:32975877
TID=Os.52246.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52246 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013043N06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013043N06, full insert sequence.
FL= gb:AK065859.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1415011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g14120Os.27639.1.S1_x_at1/1112+8009233..8012987retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g14140Os.53747.1.S1_at11/1112+8022569..8024801expressed protein
LOC_Os12g14150Os.52246.1.S1_at11/1112+8028826..8034093expressed protein
LOC_Os12g14160NANA12+8036654..8037472hypothetical protein
LOC_Os12g14170Os.27435.1.S1_x_at5/1112+8042153..8045455transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g14170Os.46334.1.S1_x_at3/1112+8042153..8045455transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g14180OsAffx.22421.1.S1_at4/1112+8048211..8053248transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g14180OsAffx.22421.4.S1_x_at3/1112+8048211..8053248transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g14180OsAffx.22421.2.S1_at3/1112+8048211..8053248transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g14180Os.26886.3.S1_x_at1/1112+8048211..8053248transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g14190NANA12+8056933..8059950transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52246.1.S1_at--847--10271Chr12:8033493..8033517 (25 bp)
TTTGCAGCATATGGGACGTCTCCTG
LOC_Os12g14150
Os.52246.1.S1_at--551--7171Chr12:8033510..8033534 (25 bp)
GTCTCCTGTCAAGCCGGTGAAACTA
LOC_Os12g14150
Os.52246.1.S1_at--483--8971Chr12:8033527..8033551 (25 bp)
TGAAACTATTCGTCCCTGCTGATTA
LOC_Os12g14150
Os.52246.1.S1_at--310--5331Chr12:8033557..8033581 (25 bp)
GAAGTTCTCCGGTGGTCTCGAACAA
LOC_Os12g14150
Os.52246.1.S1_at--39--5291Chr12:8033611..8033635 (25 bp)
GAATGTTCGGCGAGATCTCGGGCAT
LOC_Os12g14150
Os.52246.1.S1_at--370--7591Chr12:8033630..8033654 (25 bp)
GGGCATGGTCAGTGCGGCTTTTCAC
LOC_Os12g14150
Os.52246.1.S1_at--997--4491Chr12:8033675..8033699 (25 bp)
GCCGTCCATGTCAGTCAAGCAGATG
LOC_Os12g14150
Os.52246.1.S1_at--513--871Chr12:8033697..8033721 (25 bp)
ATGGCCTCGGAGTGGAATTCCTGCG
LOC_Os12g14150
Os.52246.1.S1_at--269--1071Chr12:8033938..8033962 (25 bp)
AGGGTACATGCATAATCCGCTCTGT
LOC_Os12g14150
Os.52246.1.S1_at--48--3051Chr12:8033951..8033975 (25 bp)
AATCCGCTCTGTGTATCATTTGTTT
LOC_Os12g14150
Os.52246.1.S1_at--1015--6511Chr12:8033998..8034022 (25 bp)
GATATTTCTCTGTCTGGATTTTGTA
LOC_Os12g14150
Target Sequence 
TTTGCAGCATATGGGACGTCTCCTGTCAAGCCGGTGAAACTATTCGTCCCTGCTGATTACCCTCGAAGTTCTCCGGTGGT
CTCGAACAACAACGATGATGGAGATGAACAGCGGCGAGGAATGTTCGGCGAGATCTCGGGCATGGTCAGTGCGGCTTTTC
ACTGCGCGCTGCGTGAGCTCCCGCCGTCCATGTCAGTCAAGCAGATGGCCTCGGAGTGGAATTCCTGCGTGCAGATGATC
ATGAAGAAATTTGCGATACGGCACGGTGGAGGAACGTTCAGCTCCAGGCATGGCCAGTGGATGGATTGCACCGTTGAATG
ATTTAGTACCGTGAGGTACCGATACCTCGAGATACTTTTTGTTGTACCGAAGCAAATCTCTTAATTATTACATGAGGATG
AAGTGATACGGAGAACCGTATTTGATCTGTTGTTATTGCTGCTGGAGGGTACATGCATAATCCGCTCTGTGTATCATTTG
TTTTGATTAAGCTGGTATTGCTTTTGATATTTCTCTGTCTGGATTTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52246.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis