Browse Element(s) Details


Os.52247.1.S1_at

Description gb:AK065862.1
DB_XREF= gi:32975880
TID=Os.52247.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.52247 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013044F03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013044F03, full insert sequence.
FL= gb:AK065862.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0936010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g09310NANA9+4982025..4982288hypothetical protein
LOC_Os09g09320Os.50376.2.S1_at11/119+4987979..4990687Nuclear transport factor 2 domain containing protein, expressed
LOC_Os09g09320Os.50376.1.S1_a_at10/119+4987979..4990687Nuclear transport factor 2 domain containing protein, expressed
LOC_Os09g09330Os.25163.1.A1_x_at11/119+4991064..4996394expressed protein
LOC_Os09g09330Os.53720.1.S1_at11/119+4991064..4996394expressed protein
LOC_Os09g09350Os.50394.1.S1_at3/119+5004304..5005287hypothetical protein
LOC_Os09g09360Os.52247.1.S1_at10/119+5005931..5019011expressed protein
LOC_Os09g09370Os.21811.1.S1_at11/119+5020749..5028455phototropic-responsive NPH3 family protein, putative, expressed
LOC_Os09g09370OsAffx.29776.1.S1_x_at11/119+5020749..5028455phototropic-responsive NPH3 family protein, putative, expressed
LOC_Os09g09380NANA9+5032798..5033265hypothetical protein
LOC_Os09g09390NANA9+5040642..5041948transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52247.1.S1_at--112--6291Chr09:5018435..5018459 (25 bp)
GATGTTGGACTAAGCTTTCTCTACC
LOC_Os09g09360
Os.52247.1.S1_at--12--2711Chr09:5018446..5018470 (25 bp)
AAGCTTTCTCTACCTTGTAGCTGGA
LOC_Os09g09360
Os.52247.1.S1_at--616--3711Chr09:5018455..5018479 (25 bp)
CTACCTTGTAGCTGGATATTATTCA
LOC_Os09g09360
Os.52247.1.S1_at--279--7951Chr09:5018468..5018492 (25 bp)
GGATATTATTCATTTGTTAGCTCAA
LOC_Os09g09360
Os.52247.1.S1_at--126--10271Chr09:5018480..5018504 (25 bp)
TTTGTTAGCTCAATGGCTCTGGCTC
LOC_Os09g09360
Os.52247.1.S1_at--97--9551Chr09:5018517..5018541 (25 bp)
TCTATGCATTGGCAATCATCGGTTT
LOC_Os09g09360
Os.52247.1.S1_at--467--3071Chr09:5018530..5018554 (25 bp)
AATCATCGGTTTCATCTGCTTTGCT
LOC_Os09g09360
Os.52247.1.S1_at--737--6831Chr09:5018538..5018562 (25 bp)
GTTTCATCTGCTTTGCTTCCAGAAT
LOC_Os09g09360
Os.52247.1.S1_at--701--2711Chr09:5018722..5018746 (25 bp)
AAGCATTGCTCTTGACACTAAGGCC
LOC_Os09g09360
Os.52247.1.S1_at--618--2911Chr09:5018793..5018817 (25 bp)
AAGGAGATTTGATGAGTCACTCAGA
LOC_Os09g09360
Os.52247.1.S1_at--825--5271NONE
GAATGACCATGGGTTCCTTACTTCC
NONE
Target Sequence 
GATGTTGGACTAAGCTTTCTCTACCTTGTAGCTGGATATTATTCATTTGTTAGCTCAATGGCTCTGGCTCCTTATAGGGC
NCTCTATGCATTGGCAATCATCGGTTTCATCTGCTTTGCTTCCAGAATTATTGAAACAAGAAGTACGGTAAGAGGTGATG
TTATTTCTAGAAANNNTCGGAAGCATTCATAGGGACTAACNAATGAGAAGTGTATTTTAGATATGAAGTTGGATACATTA
GTTTATAATAGCAGATCGTGTTTTGGGGTTTATGGTTGGAAACTGCNAAGCATTGCTCTTGACACTAAGGCCNGTTTTGC
GAGGGAAATGAGGGTATATTTTTCTTTTCACTGTTGTGAAGGAGATTTGATGAGTCACTCAGATGATCTGGATATGTTGT
ATCATAGGTGGGGTTGATTTGGGGGAATTTTAAGCCCNTTGTTATGAAAAGACGGAACCNGTAACTGTACANTTGTTGAA
TGCCGACATGATNTAGTGGTTTTTTCATGAATGACCATGGGTTCCTTACTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52247.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis