Browse Element(s) Details


Os.52277.1.S1_x_at

Description gb:AK066043.1
DB_XREF= gi:32976061
TID=Os.52277.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52277 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013048F08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013048F08, full insert sequence.
FL= gb:AK066043.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4810011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48060Os.2858.1.S1_at11/113+27283376..27287077glutamine amidotransferase class-I family protein, expressed
LOC_Os03g48070OsAffx.25617.1.S1_at11/113+27289000..27289427hypothetical protein
LOC_Os03g48080Os.2854.1.S1_at10/113+27292460..27295884CHCH domain containing protein, expressed
LOC_Os03g48090Os.2852.1.S1_at10/113+27296422..27300389Vegetatible incompatibility protein HET-E-1, putative, expressed
LOC_Os03g48100Os.52277.1.S1_x_at11/113+27300802..27307338expressed protein
LOC_Os03g48100Os.52277.1.S1_at9/113+27300802..27307338expressed protein
LOC_Os03g48104Os.50749.1.A1_at10/113+27312221..27313439expressed protein
LOC_Os03g48110Os.9082.1.S1_at9/113+27314050..27318264expressed protein
LOC_Os03g48120OsAffx.29738.3.S1_at11/113+27319292..27320224BTB/POZ domain containing protein
LOC_Os03g48120OsAffx.29738.3.S1_x_at11/113+27319292..27320224BTB/POZ domain containing protein
LOC_Os03g48140OsAffx.25619.1.S1_at11/113+27323367..27336685unconventional myosin heavy chain, putative, expressed
LOC_Os03g48140Os.10915.1.S1_at11/113+27323367..27336685unconventional myosin heavy chain, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52277.1.S1_x_at--1096--10031Chr03:27306759..27306783 (25 bp)
TAGAGAGTTTGTCCTTCTACCTCAC
LOC_Os03g48100
Os.52277.1.S1_x_at--851--4891Chr03:27306801..27306825 (25 bp)
GCTTACAGCTGATAGGATTCTTCGT
LOC_Os03g48100
Os.52277.1.S1_x_at--465--6071Chr03:27306898..27306922 (25 bp)
GAGTTCATGGAATTGCTTCCTCCAC
LOC_Os03g48100
Os.52277.1.S1_x_at--964--8811Chr03:27306948..27306972 (25 bp)
TGTTGGCAGTGCATATGGTCCACCA
LOC_Os03g48100
Os.52277.1.S1_x_at--118--1031Chr03:27307061..27307085 (25 bp)
AGGTATACCTTGACTCTCATCGAAG
LOC_Os03g48100
Os.52277.1.S1_x_at--252--2831Chr03:27307094..27307118 (25 bp)
AAGTTCTAACTGTGGCAGCTGGCAT
LOC_Os03g48100
Os.52277.1.S1_x_at--433--3391Chr03:27307109..27307133 (25 bp)
CAGCTGGCATGGTTGGATCGGTTAC
LOC_Os03g48100
Os.52277.1.S1_x_at--758--1631Chr03:27307245..27307269 (25 bp)
AGCGAAAGCCTTTGTTGATCAGTGT
LOC_Os03g48100
Os.52277.1.S1_x_at--867--7391Chr03:27307268..27307292 (25 bp)
GTGATAACCCTGTAAGTTGACTGTT
LOC_Os03g48100
Os.52277.1.S1_x_at--1015--6651Chr03:27307283..27307307 (25 bp)
GTTGACTGTTCTATTTTCTGTGGAT
LOC_Os03g48100
Os.52277.1.S1_x_at--257--10611Chr03:27307298..27307322 (25 bp)
TTCTGTGGATTTTCTTGACTGTCAT
LOC_Os03g48100
Target Sequence 
TAGAGAGTTTGTCCTTCTACCTCACAATAAGCTTGTAAAATTGCTTACAGCTGATAGGATTCTTCGTGAAATTAACTTGG
TCAAGCTTGAATCTTTACTTTGGCATAATGATGAAAACATCAATAAAATAACTCATACAGAGTTCATGGAATTGCTTCCT
CCACTTTTGCTTTCCACCAAAGATGTCTATGTTGGCAGTGCATATGGTCCACCAAGAGAAAGTGAGAAAGTTATTTCACT
AGAGTTAGGTGCCTTGGATGTTTTAATATCAGCATGTGAAAATGCTAAACCAATGAACATCCAGGTATACCTTGACTCTC
ATCGAAGGAAAATGCAAGTTCTAACTGTGGCAGCTGGCATGGTTGGATCGGTTACCACCAATGAGGGGAAAAAATCAAGT
GATATAGAGTTTATGGAAACAATGAATAGGAATCGACTGGAAAGTGTTGTAGAAGCAGTCAAAGATGTTTCTCGAAATGC
TAGTAAAGCGAAAGCCTTTGTTGATCAGTGTGATAACCCTGTAAGTTGACTGTTCTATTTTCTGTGGATTTTCTTGACTG
TCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52277.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis