Browse Element(s) Details


Os.52350.1.S1_at

Description gb:AK066572.1
DB_XREF= gi:32976590
TID=Os.52350.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.52350 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013070O10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013070O10, full insert sequence.
FL= gb:AK066572.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4237011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42320Os.18716.1.S1_at11/114+24819826..24826676AT hook motif family protein, expressed
LOC_Os04g42330Os.14766.1.S1_at11/114+24829333..24835384Spc97/Spc98 family protein, expressed
LOC_Os04g42340Os.8599.1.S1_at11/114+24837573..24839874expressed protein
LOC_Os04g42350OsAffx.14241.1.S1_at11/114+24840694..24842884heavy metal-associated domain containing protein
LOC_Os04g42360Os.52412.1.S1_at11/114+24843423..24848035expressed protein
LOC_Os04g42370Os.52350.1.S1_at11/114+24848539..24856104expressed protein
LOC_Os04g42380Os.9405.1.S1_at11/114+24857706..2485994040S ribosomal protein S11, putative, expressed
LOC_Os04g42399OsAffx.19542.3.S1_x_at3/114+24863702..24870238retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52350.1.S1_at--840--5511Chr04:24855446..24855470 (25 bp)
GAAAATAGCGCAACTGTCCTCTGGG
LOC_Os04g42370
Os.52350.1.S1_at--860--9871Chr04:24855741..24855765 (25 bp)
TACATCCTTTTTCTATCTACTTCCT
LOC_Os04g42370
Os.52350.1.S1_at--772--8051Chr04:24855773..24855797 (25 bp)
GGAGACTACTCGCTGCAAGCTGCTT
LOC_Os04g42370
Os.52350.1.S1_at--699--2691Chr04:24855789..24855813 (25 bp)
AAGCTGCTTCTGTTATAATTGACGC
LOC_Os04g42370
Os.52350.1.S1_at--797--5431Chr04:24855857..24855881 (25 bp)
GAACCTATACTATGCCGTGGATCTC
LOC_Os04g42370
Os.52350.1.S1_at--178--6411Chr04:24855876..24855900 (25 bp)
GATCTCCATTCCATATCCATGTAGT
LOC_Os04g42370
Os.52350.1.S1_at--806--1531Chr04:24855907..24855931 (25 bp)
AGCTTAGCCGGACTTTCTTGGATTT
LOC_Os04g42370
Os.52350.1.S1_at--829--1371Chr04:24855937..24855961 (25 bp)
AGAGCGTGCCCTGTATCGTGCGTGA
LOC_Os04g42370
Os.52350.1.S1_at--977--6071Chr04:24855960..24855984 (25 bp)
GAGTTTCGTGACATGTGCAGCTGCG
LOC_Os04g42370
Os.52350.1.S1_at--764--5111Chr04:24856006..24856030 (25 bp)
GCACATCTGATTTATTTGAGCCGCA
LOC_Os04g42370
Os.52350.1.S1_at--707--5291Chr04:24856032..24856056 (25 bp)
GAAGGCTTCCCTGTAACACAGTTGT
LOC_Os04g42370
Target Sequence 
GAAAATAGCGCAACTGTCCTCTGGGCTGGTGTTNTTAGTGACATATATCTGGAGGTTCAACCNCTGCAGGAGGTAGTACA
TCCTTTTTCTATCTACTTCCTGGTCCCCGGAGACTACTCGCTGCAAGCTGCTTCTGTTATAATTGACGCAACCGATGTTN
TTCGTGCTCGGGCAAAGGCAGAGTCGCCCGACGAACCTATACTATGCCGTGGATCTCCATTCCATATCCATGTAGTTGGT
ACAGCTTAGCCGGACTTTCTTGGATTTAGTNTAGAGCGTGCCCTGTATCGTGCGTGAGTTTCGTGACATGTGCAGCTGCG
AAGATCATGTAGAATTTTTATGCACATCTGATTTATTTGAGCCGCATGAAGGCTTCCCTGTAACACAGTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52350.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis