Browse Element(s) Details


Os.52393.1.S1_at

Description gb:AK066822.1
DB_XREF= gi:32976840
TID=Os.52393.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52393 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013077F20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013077F20, full insert sequence.
FL= gb:AK066822.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g418001/11regulatory protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41780Os.54937.1.S1_at11/118+26246575..26251798ab-hydrolase associated lipase region family protein, expressed
LOC_Os08g41790Os.9281.1.S1_at11/118+26256896..26262446uridine kinase family protein, expressed
LOC_Os08g41800Os.52393.1.S1_at1/118+26265481..26268259regulatory protein, putative, expressed
LOC_Os08g41810Os.10112.1.S1_at11/118+26273183..2627568460S ribosomal protein L17, putative, expressed
LOC_Os08g41820OsAffx.29627.2.S1_at11/118+26281044..26283096Exo70 exocyst complex subunit family protein, expressed
LOC_Os08g41830Os.46015.1.A1_s_at11/118+26284917..26289847Sulfite oxidase, putative, expressed
LOC_Os08g41830Os.18635.1.S1_at11/118+26284917..26289847Sulfite oxidase, putative, expressed
LOC_Os08g41840NANA8+26289375..26291137expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52393.1.S1_at--58--4611Chr08:26268087..26268111 (25 bp)
GCGACATGGCCAGGGTCTGCACGCT
LOC_Os08g41800
Os.52393.1.S1_at--267--1831Chr08:26268236..26268260 (25 bp)
ACGCCGGGCAAGTGCATCCGCTGAC
NONE
Os.52393.1.S1_at--321--4771Chr08:26268271..26268295 (25 bp)
GCTGCTTGCTACTAGCTTAATTTTA
NONE
Os.52393.1.S1_at--707--3811Chr08:26268321..26268345 (25 bp)
CTGCTACCACTGTTTATTACTACCT
NONE
Os.52393.1.S1_at--1132--1951Chr08:26268494..26268518 (25 bp)
ACTGTGATTGTTTTACGTACTGGTC
NONE
Os.52393.1.S1_at--313--2791Chr08:26268519..26268543 (25 bp)
AAGAGTAGTCAGTGCGTGTGTACAT
NONE
Os.52393.1.S1_at--377--4671Chr08:26268532..26268556 (25 bp)
GCGTGTGTACATTTTCTTGTTTCCC
NONE
Os.52393.1.S1_at--22--3631Chr08:26268547..26268571 (25 bp)
CTTGTTTCCCTCTTGTTGGGATCTA
NONE
Os.52393.1.S1_at--855--4291Chr08:26268555..26268579 (25 bp)
CCTCTTGTTGGGATCTAAGTGGGAC
NONE
Os.52393.1.S1_at--88--451Chr08:26268567..26268591 (25 bp)
ATCTAAGTGGGACTGATTGATATCA
NONE
Os.52393.1.S1_at--985--3471Chr08:26268590..26268614 (25 bp)
CAGGAGCATTGTAAAAGTGTTCTTT
NONE
Target Sequence 
GCGACATGGCCAGGGTCTGCACGCTCCACGCCAACTGCTGCACCGGCCTCGCCAACAAGGTGCACGACCTCGCCGCCGTC
CTCCGCGACTGGAGGAACTACACGGCGGCACCGCCGGCGGCGAGGCGCCGGGGAGGCTTCGGATGGACCACGCCGGGCAA
GTGCATCCGCTGACACCTCCAGCAGCTGCTTGCTACTAGCTTAATTTTAAGCTTTTAGCCTAGCTAGCTAGCTGCTGCTA
CCACTGTTTATTACTACCTCCGTTTCAGATTATAAAATTTTATAGCATTGTTCATATTTATATAGATGTTAATGAATCTA
TGCACATATATCTAGATTCATTAATATCTATATAAATGTAGACAATGCTAGAAAGTTTTATGATATAAAACAGATAAAGT
AGTTATTACTGTGATTGTTTTACGTACTGGTCAAGAGTAGTCAGTGCGTGTGTACATTTTCTTGTTTCCCTCTTGTTGGG
ATCTAAGTGGGACTGATTGATATCAGGAGCATTGTAAAAGTGTTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52393.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis