Browse Element(s) Details


Os.52412.1.S1_at

Description gb:AK066956.1
DB_XREF= gi:32976974
TID=Os.52412.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52412 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013092M08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013092M08, full insert sequence.
FL= gb:AK066956.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4236011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42320Os.18716.1.S1_at11/114+24819826..24826676AT hook motif family protein, expressed
LOC_Os04g42330Os.14766.1.S1_at11/114+24829333..24835384Spc97/Spc98 family protein, expressed
LOC_Os04g42340Os.8599.1.S1_at11/114+24837573..24839874expressed protein
LOC_Os04g42350OsAffx.14241.1.S1_at11/114+24840694..24842884heavy metal-associated domain containing protein
LOC_Os04g42360Os.52412.1.S1_at11/114+24843423..24848035expressed protein
LOC_Os04g42370Os.52350.1.S1_at11/114+24848539..24856104expressed protein
LOC_Os04g42380Os.9405.1.S1_at11/114+24857706..2485994040S ribosomal protein S11, putative, expressed
LOC_Os04g42399OsAffx.19542.3.S1_x_at3/114+24863702..24870238retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52412.1.S1_at--786--5211Chr04:24847320..24847344 (25 bp)
GAATTCAGTGAATTTCCAGGTCCAG
LOC_Os04g42360
Os.52412.1.S1_at--409--8231Chr04:24847571..24847595 (25 bp)
GGCAAGCTGCAGTTATTCTGCCCAA
LOC_Os04g42360
Os.52412.1.S1_at--311--9491Chr04:24847587..24847611 (25 bp)
TCTGCCCAATCCTCAGCTAGATAGA
LOC_Os04g42360
Os.52412.1.S1_at--771--1411Chr04:24847612..24847636 (25 bp)
AGAACTTCCGGTTTAACTCCAGCTG
LOC_Os04g42360
Os.52412.1.S1_at--143--5871Chr04:24847637..24847661 (25 bp)
GAGCCAGTTCCCTGGATCAGGAGAC
LOC_Os04g42360
Os.52412.1.S1_at--998--5571Chr04:24847700..24847724 (25 bp)
GAAATAGTTACTCAGATCGTGCTCC
LOC_Os04g42360
Os.52412.1.S1_at--285--511Chr04:24847715..24847739 (25 bp)
ATCGTGCTCCTGTGGACTTGTGCAG
LOC_Os04g42360
Os.52412.1.S1_at--970--5031Chr04:24847736..24847760 (25 bp)
GCAGTTGTGTTGTGCTGTACTTACA
LOC_Os04g42360
Os.52412.1.S1_at--734--5531Chr04:24847843..24847867 (25 bp)
GAAACACCCATTAGGCCATTAGGCC
LOC_Os04g42360
Os.52412.1.S1_at--379--7451Chr04:24847897..24847921 (25 bp)
GTGTCACCCTGCTGTGCATTATATA
LOC_Os04g42360
Os.52412.1.S1_at--261--1591Chr04:24847965..24847989 (25 bp)
AGCTCTGGTAGCTACATTCTGTAAA
LOC_Os04g42360
Target Sequence 
GAATTCAGTGAATTTCCAGGTCCAGATATTAAGTTTGGGAGCATCAACATCAGAGATATACCATTGCTGCAGGGAAGGCA
AGCTGCAGTTATTCTGCCCAATCCTCAGCTAGATAGAAGAACTTCCGGTTTAACTCCAGCTGGAGCCAGTTCCCTGGATC
AGGAGACAGATCAGGAGCTGAATGAAAAGCTTTTGTAGTAGTTATGAAATAGTTACTCAGATCGTGCTCCTGTGGACTTG
TGCAGTTGTGTTGTGCTGTACTTACAAATCTGTCTTAAATTGGGCATTTGTCATGCTGAAAAGAATCCGCTGAAGATAGT
GGTAAACTGGTACACAAAATTCTGTCTTGAAACACCCATTAGGCCATTAGGCCCATTAGTCAGCAAGAACATGTTGAAGG
CAGTGTCACCCTGCTGTGCATTATATAACTCAGAATAGCAAGTATTCTTTGGCTGTTTGTACTGAACAATAGCTCTGGTA
GCTACATTCTGTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52412.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis