Browse Element(s) Details


Os.52416.1.S1_at

Description gb:AK066980.1
DB_XREF= gi:32976998
TID=Os.52416.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52416 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013093M05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013093M05, full insert sequence.
FL= gb:AK066980.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4982011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49760Os.26684.1.S1_at11/112+30412629..30417270Potassium transporter 8, putative, expressed
LOC_Os02g49770Os.50746.1.S1_at11/112+30421851..30425872NHL repeat-containing protein, putative, expressed
LOC_Os02g49780Os.9055.1.S1_at11/112+30426278..30428217expressed protein
LOC_Os02g49780OsAffx.30922.1.S1_x_at1/112+30426278..30428217expressed protein
LOC_Os02g49780OsAffx.30922.1.S1_at1/112+30426278..30428217expressed protein
LOC_Os02g49790OsAffx.3020.1.S1_at11/112+30429159..30431646expressed protein
LOC_Os02g49800Os.10843.1.S1_at11/112+30432084..30435591Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g49810OsAffx.3021.1.S1_at11/112+30436599..30436965hypothetical protein
LOC_Os02g49820Os.52416.1.S1_at11/112+30439080..30442151RNA recognition motif family protein, expressed
LOC_Os02g49830OsAffx.24799.1.S1_at11/112+30442173..30443713PPR986-12, putative, expressed
LOC_Os02g49840OsAffx.12568.1.S1_at10/112+30450833..30456821Agamous-like MADS box protein AGL21, putative, expressed
LOC_Os02g49840Os.26399.1.S1_at10/112+30450833..30456821Agamous-like MADS box protein AGL21, putative, expressed
LOC_Os02g49850OsAffx.12569.1.S1_at11/112+30461715..30462567Chemocyanin precursor, putative, expressed
LOC_Os02g49860NANA2+30463622..30464149ABA induced plasma membrane protein PM 19, putative
LOC_Os02g49870Os.12058.1.S1_at11/112+30466113..30467246expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52416.1.S1_at--793--8631Chr02:30441409..30441433 (25 bp)
TGAGAAAACTTTGCGGGCTGCCTTT
LOC_Os02g49820
Os.52416.1.S1_at--502--3911Chr02:30441623..30441647 (25 bp)
CTGGAGGTGCTGCTCTGAAAGCAAT
LOC_Os02g49820
Os.52416.1.S1_at--25--2511Chr02:30441788..30441812 (25 bp)
AACATAGATCGAGGGACCGTCAACC
LOC_Os02g49820
Os.52416.1.S1_at--196--4211Chr02:30441812..30441836 (25 bp)
CCCCGTATAGTGCATCAGGTAGATC
LOC_Os02g49820
Os.52416.1.S1_at--961--1011Chr02:30441828..30441852 (25 bp)
AGGTAGATCCAATCAAGTGCTTCGA
LOC_Os02g49820
Os.52416.1.S1_at--991--2851Chr02:30441842..30441866 (25 bp)
AAGTGCTTCGATCGCGTTATCATAC
LOC_Os02g49820
Os.52416.1.S1_at--163--5511Chr02:30441872..30441896 (25 bp)
GAACAAAGCATGACACCTAGAGATT
LOC_Os02g49820
Os.52416.1.S1_at--408--3571Chr02:30441932..30441956 (25 bp)
CATAGTTTTCCGGTGGTGTTGTATT
LOC_Os02g49820
Os.52416.1.S1_at--1088--8811Chr02:30441948..30441972 (25 bp)
TGTTGTATTTTTGCGTGGCCTGCTA
LOC_Os02g49820
Os.52416.1.S1_at--354--8431Chr02:30441964..30441988 (25 bp)
GGCCTGCTATTCTAATGTTTCCAAG
LOC_Os02g49820
Os.52416.1.S1_at--349--4672Chr10:21743251..21743727 (25 bp)
GCGGGCTACAGATTCCATAAGTTTA
NONE
Target Sequence 
TGAGAAAACTTTGCGGGCTGCCTTTGAGCCTTTTNGTGAACTAGTTGAAGTGAAGATAATAATGGACAAGATATCAAAAA
GATCAAAAGGGTATGCTTTCATAGAATACACCACAGAAGAAGCTGGAGGTGCTGCTCTGAAAGCAATGAACGGACAGATA
ATAAATGGCTGGATGATAGTTGTCGATGTTGCTAAACATAGATCGAGGGACCGTCAACCCCCGTATAGTGCATCAGGTAG
ATCCAATCAAGTGCTTCGATCGCGTTATCATACTGGATGAACAAAGCATGACACCTAGAGATTAGACACAAGATTAGCAG
TGAGTACGAAGTAGAAACCATAGTTTTCCGGTGGTGTTGTATTTTTGCGTGGCCTGCTATTCTAATGTTTCCAAGAGATG
ATAGCGGGCTACAGATTCCATAAGTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52416.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis