Browse Element(s) Details


Os.52419.1.S1_at

Description gb:AK066989.1
DB_XREF= gi:32977007
TID=Os.52419.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52419 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013092J19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013092J19, full insert sequence.
FL= gb:AK066989.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0200011/11Uridylate kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g01966Os.4404.1.S1_at11/116+542058..544778Integral membrane protein DUF6 containing protein, expressed
LOC_Os06g01966Os.4404.1.S1_s_at11/116+542058..544778Integral membrane protein DUF6 containing protein, expressed
LOC_Os06g01972Os.11580.1.S1_at10/116+545505..549383Integral membrane protein DUF6 containing protein, expressed
LOC_Os06g01980Os.4407.1.S1_at11/116+549954..554812Cell division control protein 48 homolog C, putative, expressed
LOC_Os06g01980Os.4407.2.S1_at10/116+549954..554812Cell division control protein 48 homolog C, putative, expressed
LOC_Os06g01990Os.44850.1.S1_at11/116+554637..555548HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os06g02000Os.52419.1.S1_at11/116+563535..566659Uridylate kinase, putative, expressed
LOC_Os06g02010NANA6+572964..573323hypothetical protein
LOC_Os06g02019Os.10689.1.S1_at11/116+579671..585449Cytochrome P450 88A1, putative, expressed
LOC_Os06g02028OsAffx.4692.1.S1_at11/116+586544..591158EYA conserved domain containing protein, expressed
LOC_Os06g02028Os.12721.1.S1_at11/116+586544..591158EYA conserved domain containing protein, expressed
LOC_Os06g02028OsAffx.4692.1.S1_x_at10/116+586544..591158EYA conserved domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0009041molecular_functionuridylate kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52419.1.S1_at--1128--10431Chr06:565639..565663 (25 bp)
TTAGGAGACGCTTTGATGTTTTTCA
LOC_Os06g02000
Os.52419.1.S1_at--102--10371Chr06:565657..565681 (25 bp)
TTTTTCAGCAGCAAACTCTTCCAGT
LOC_Os06g02000
Os.52419.1.S1_at--937--2931Chr06:565926..565950 (25 bp)
AAGGCCATTTTTGCTCAGTTGAACA
LOC_Os06g02000
Os.52419.1.S1_at--47--391Chr06:566056..566077 (22 bp)
ATCAGAAAATTCATGGTGGCCAGCA
LOC_Os06g02000
Os.52419.1.S1_at--167--10831Chr06:566120..566144 (25 bp)
TTGGTTCTTTGACTTTTTCTGCGGT
LOC_Os06g02000
Os.52419.1.S1_at--126--10291Chr06:566135..566325 (25 bp)
TTTCTGCGGTTGCTTTGGGACTAAA
LOC_Os06g02000
Os.52419.1.S1_at--650--5571Chr06:566354..566378 (25 bp)
GAAAGTGACATGATCTCTCTGCGTG
LOC_Os06g02000
Os.52419.1.S1_at--877--451Chr06:566366..566390 (25 bp)
ATCTCTCTGCGTGTGTGTGGTGGAC
LOC_Os06g02000
Os.52419.1.S1_at--511--7311Chr06:566491..566515 (25 bp)
GTGCTAGTTGACTGTTTCGGTTCAA
LOC_Os06g02000
Os.52419.1.S1_at--72--6491Chr06:566537..566561 (25 bp)
GATACTGCATGTTGGCTTGTTTGGT
LOC_Os06g02000
Os.52419.1.S1_at--614--6591Chr06:566567..566591 (25 bp)
GATTGCAGCTTCGAGATTCATTATT
LOC_Os06g02000
Target Sequence 
TTAGGAGACGCTTTGATGTTTTTCAGCAGCAAACTCTTCCAGTTATTCAGTACTATGAGAAAAGGGGGAAACTCAGAAAG
GTTGATGGTAACCGACAGGTAGATGAAGTTTTCGAAGACGTTAAGGCCATTTTTGCTCAGTTGAACAATCAGAAAATTCA
TGGTGGCCAGCAAGCTAGTGGTTTGAGCAGAGCACAAATGAATCCATTGAAACGTTGGTTCTTTGACTTTTTCTGCGGTT
GCTTTGGGACTAAAGAAGAAGCAAGAAACTGACAGTAGAAATGAAAGTGACATGATCTCTCTGCGTGTGTGTGGTGGACT
GTGGAGTACCTAGAGGCTGGTGCAGAATTTCAGAAAGAGAGAGAACAAAAAACTTGTGATGTCTTGAGTTACTACTAGTA
TATATGGTGATGGTGTGTTGTGCTAGTTGACTGTTTCGGTTCAATAGTCTAGTGTGACCTGTGAAGATACTGCATGTTGG
CTTGTTTGGTTTGTTGATTGCAGCTTCGAGATTCATTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52419.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis