Browse Element(s) Details


Os.52448.2.S1_at

Description gb:AK067186.1
DB_XREF= gi:32977204
TID=Os.52448.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52448 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013123L13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013094J18, full insert sequence.
FL= gb:AK067186.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3999011/11expressed protein
LOC_Os03g579105/11expressed protein
LOC_Os05g031743/11beta3-glucuronyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39950OsAffx.16647.1.S1_at9/117+23964188..23968364Mitotic checkpoint protein BUB3, putative, expressed
LOC_Os07g39960Os.55561.1.S1_at11/117+23971763..23975024Zinc finger, C2H2 type family protein
LOC_Os07g39970Os.50628.1.S1_at11/117+23978845..23979556Zinc finger, C2H2 type family protein, expressed
LOC_Os07g39980Os.23164.1.S1_a_at11/117+23983584..23988259expressed protein
LOC_Os07g39990Os.52448.2.S1_at11/117+23989712..23990632expressed protein
LOC_Os07g40000Os.52902.1.S1_at11/117+23994820..23995870LOB domain protein 37, putative, expressed
LOC_Os07g40010Os.47086.1.S1_at1/117+23997752..23999295retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g40010OsAffx.485.1.S1_at1/117+23997752..23999295retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g40020OsAffx.28833.1.S1_at11/117+24012923..24014484scarecrow transcription factor family protein, putative, expressed
LOC_Os07g40020OsAffx.28833.1.S1_x_at11/117+24012923..24014484scarecrow transcription factor family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006486biological_processprotein amino acid glycosylation
GO:0009834biological_processsecondary cell wall biosynthesis (sensu Magnoliophyta)
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52448.2.S1_at--465--1393Chr11:2347622..2347646 (25 bp)
AGACCGAGTCAGTACTCCATCCATC
NONE
Os.52448.2.S1_at--651--534Chr11:2347648..2347672 (25 bp)
ATCCCATTTGGTTTCTCACTTCCTT
NONE
Os.52448.2.S1_at--663--1171Chr07:23990454..23990478 (25 bp)
AGTACTGTTTCATTTAGGTTGCAAA
LOC_Os07g39990
Os.52448.2.S1_at--691--7314Chr11:2347724..2347748 (25 bp)
GTGCTAATCCGAATGCTTCTTTCTT
NONE
Os.52448.2.S1_at--489--4915Chr11:2347738..2347762 (25 bp)
GCTTCTTTCTTCATGTTGATTTCTA
NONE
Os.52448.2.S1_at--458--6651Chr07:23990514..23990538 (25 bp)
GTTGATTTCTAATTAACCTCAGAGG
LOC_Os07g39990
Os.52448.2.S1_at--512--6151Chr07:23990535..23990559 (25 bp)
GAGGTTGAACCTCTCTCATTTTTTG
LOC_Os07g39990
Os.52448.2.S1_at--986--5431Chr07:23990541..23990565 (25 bp)
GAACCTCTCTCATTTTTTGCTTGAT
LOC_Os07g39990
Os.52448.2.S1_at--112--6552Chr11:2347797..2347821 (25 bp)
GATTATTAGGAGCACTCTTTCGTTT
NONE
Os.52448.2.S1_at--49--3312Chr11:2347809..2347833 (25 bp)
CACTCTTTCGTTTATAGGTTGCCAA
NONE
Os.52448.2.S1_at--85--7333Chr11:2347841..2347864 (24 bp)
GTGCTAATCTGAATGCTTCTTGATC
NONE
Target Sequence 
AGACCGAGTCAGTACTCCATCCATCCATCCCATTTGGTTTCTCACTTCCTTTTTTTTTGCTTGATTATTAGTACTGTTTC
ATTTAGGTTGCAAATTGGAATGTGCTAATCCGAATGCTTCTTTCTTCATGTTGATTTCTAATTAACCTCAGAGGTTGAAC
CTCTCTCATTTTTTGCTTGATTATTAGGAGCACTCTTTCGTTTATAGGTTGCCAATTGGAATGTGCTAATCTGAATGCTT
CTTGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52448.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis