Browse Element(s) Details


Os.52466.1.S1_at

Description gb:AK067305.1
DB_XREF= gi:32977323
TID=Os.52466.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52466 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013100P11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013100P11, full insert sequence.
FL= gb:AK067305.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0728011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07250OsAffx.16871.1.S1_at11/118+4043663..4044171hypothetical protein
LOC_Os08g07260OsAffx.5734.1.S1_at11/118+4046809..4048291O-methyltransferase family protein
LOC_Os08g07270OsAffx.16872.1.S1_at11/118+4051250..4052767Cytokinin-O-glucosyltransferase 2, putative
LOC_Os08g07270OsAffx.16870.1.S1_x_at1/118+4051250..4052767Cytokinin-O-glucosyltransferase 2, putative
LOC_Os08g07280Os.52466.1.S1_at11/118+4059640..4062930expressed protein
LOC_Os08g07290Os.57432.1.S1_a_at11/118+4063464..4071319HEAT repeat family protein, expressed
LOC_Os08g07300Os.6557.1.S1_s_at11/118+4072322..4082539haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os08g07300OsAffx.29076.1.S1_s_at11/118+4072322..4082539haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os08g07300Os.53790.1.S1_at10/118+4072322..4082539haloacid dehalogenase-like hydrolase family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52466.1.S1_at--1063--9591Chr08:4062412..4062436 (25 bp)
TCATAGACCCAATTCAACCATTACC
LOC_Os08g07280
Os.52466.1.S1_at--356--1711Chr08:4062428..4062452 (25 bp)
ACCATTACCATCACTAAACCAACTG
LOC_Os08g07280
Os.52466.1.S1_at--665--7251Chr08:4062453..4062477 (25 bp)
GTCCGAATAAGCCATTACAGAGCGA
LOC_Os08g07280
Os.52466.1.S1_at--263--2391Chr08:4062483..4062507 (25 bp)
AAACTGGTCTGAATAGGCCGTTTGA
LOC_Os08g07280
Os.52466.1.S1_at--354--5231Chr08:4062529..4062553 (25 bp)
GAATAGGCCATTCCAGAGTAACAAA
LOC_Os08g07280
Os.52466.1.S1_at--456--5951Chr08:4062580..4062604 (25 bp)
GAGCAACAAACCAACTGATCTGAAT
LOC_Os08g07280
Os.52466.1.S1_at--1083--10031Chr08:4062635..4062659 (25 bp)
TAGAGGATCAAACCGCAGCATCGCG
LOC_Os08g07280
Os.52466.1.S1_at--121--6071Chr08:4062672..4062696 (25 bp)
GAGTTCGCCTTGCTTGTGCAGCAAA
LOC_Os08g07280
Os.52466.1.S1_at--147--10071Chr08:4062767..4062791 (25 bp)
TAGTCTTGTCTGAAGTTGGCCTCAC
LOC_Os08g07280
Os.52466.1.S1_at--646--3331Chr08:4062789..4062813 (25 bp)
CACTGAGCACTCGTATGTTGTATCT
LOC_Os08g07280
Os.52466.1.S1_at--858--6631Chr08:4062805..4062829 (25 bp)
GTTGTATCTGAAGAGCATCCGTTTG
LOC_Os08g07280
Target Sequence 
TCATAGACCCAATTCAACCATTACCATCACTAAACCAACTGGTCCGAATAAGCCATTACAGAGCGACAAACAAACTGGTC
TGAATAGGCCGTTTGAGAGCAATAAACCAACTGGTCAGAATAGGCCATTCCAGAGTAACAAACCAACTGGTCAAAATAGG
CCATTGCAGAGCAACAAACCAACTGATCTGAATAGGCCGTTTCAGAGCAATAGGCCGAAATTCTAGAGGATCAAACCGCA
GCATCGCGTTCTTGACTCCAGAGTTCGCCTTGCTTGTGCAGCAAAAACATCAAATTTCTTGTGCACAAGTTGTGGTAGTT
TACCATAACATGAACTCATTGTGCTCTAGGAAAAATAGTCTTGTCTGAAGTTGGCCTCACTGAGCACTCGTATGTTGTAT
CTGAAGAGCATCCGTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52466.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis