Browse Element(s) Details


Os.52472.1.S1_at

Description gb:AK107561.1
DB_XREF= gi:32992770
TID=Os.52472.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52472 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-130-B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-130-B10, full insert sequence.
FL= gb:AK107561.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1059011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g10550OsAffx.26814.1.S1_at11/115+5720801..5722058hypothetical protein
LOC_Os05g10560OsAffx.14618.1.S1_x_at11/115+5726656..5727177IQ calmodulin-binding motif family protein, expressed
LOC_Os05g10570Os.35338.1.S1_at11/115+5728909..5730250expressed protein
LOC_Os05g10570Os.50835.1.S1_x_at11/115+5728909..5730250expressed protein
LOC_Os05g10580OsAffx.4294.1.S1_at11/115+5735815..5739914Cullin family protein, expressed
LOC_Os05g10590Os.52472.1.S1_at11/115+5743159..5746733expressed protein
LOC_Os05g10590Os.52472.2.S1_x_at11/115+5743159..5746733expressed protein
LOC_Os05g10600NANA5+5756046..5756468hypothetical protein
LOC_Os05g10610NANA5+5759560..5761776retrotransposon protein, putative, unclassified
LOC_Os05g10620Os.39872.1.A1_s_at11/115+5763454..5768869no apical meristem, putative, expressed
LOC_Os05g10630Os.25488.1.S1_at11/115+5771164..5776610O-sialoglycoprotein endopeptidase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52472.1.S1_at--823--7791Chr05:5746147..5746171 (25 bp)
GGTCTCATTAGTTGCCCAAAGGCTT
LOC_Os05g10590
Os.52472.1.S1_at--952--4452Chr11:16692912..16692932 (21 bp)
GCCGTAACGGTTTATTAGCGACTAG
NONE
Os.52472.1.S1_at--906--8271Chr05:5746331..5746355 (25 bp)
GGCTTTGGCTTTTTATGCCAACCGA
LOC_Os05g10590
Os.52472.1.S1_at--35--2631Chr05:5746350..5746374 (25 bp)
AACCGATGTGGCTTTGGCATACCTT
LOC_Os05g10590
Os.52472.1.S1_at--563--8271Chr05:5746359..5746383 (25 bp)
GGCTTTGGCATACCTTTCAGTTAGT
LOC_Os05g10590
Os.52472.1.S1_at--863--8271Chr05:5746365..5746389 (25 bp)
GGCATACCTTTCAGTTAGTAGCTAA
LOC_Os05g10590
Os.52472.1.S1_at--357--6791Chr05:5746378..5746402 (25 bp)
GTTAGTAGCTAATGACAGTCTTTGA
LOC_Os05g10590
Os.52472.1.S1_at--949--4951Chr05:5746405..5746429 (25 bp)
GCATATATTGCTTTTCATCCAGTAT
LOC_Os05g10590
Os.52472.1.S1_at--815--3531Chr05:5746420..5746444 (25 bp)
CATCCAGTATTCATGGCATTCAATA
LOC_Os05g10590
Os.52472.1.S1_at--151--7071Chr05:5746460..5746484 (25 bp)
GTAAGTCGATCATTTTGCAGGTCTG
LOC_Os05g10590
Os.52472.1.S1_at--603--6431Chr05:5746467..5746491 (25 bp)
GATCATTTTGCAGGTCTGATCTTTG
LOC_Os05g10590
Target Sequence 
GGTCTCATTAGTTGCCCAAAGGCTTATTATAAGCCGTAACGGTTTATTAGCGACTAGAAAATAATTTGTGTCTAAAAATT
TTATATATGTGTTGTTAGTGACTTAAAAGGCAATGCTGAAAAAAAAACTACGTTGAAAATATCTCAAAATCAACTTCAAA
ATTAAGTTTCAAAATTCAAATGTTGGCTTTGGCTTTTTATGCCAACCGATGTGGCTTTGGCATACCTTTCAGTTAGTAGC
TAATGACAGTCTTTGATAGCATATATTGCTTTTCATCCAGTATTCATGGCATTCAATATTATTATCTGATAATGTAAGTC
GATCATTTTGCAGGTCTGATCTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52472.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis