Browse Element(s) Details


Os.52474.1.S1_at

Description gb:AK067354.1
DB_XREF= gi:32977372
TID=Os.52474.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52474 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013103C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013103C07, full insert sequence.
FL= gb:AK067354.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4998011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49930Os.47898.1.A1_at11/115+28557003..28558717GRAS family transcription factor containing protein, expressed
LOC_Os05g49940Os.27218.1.A1_at11/115+28564193..28564952expressed protein
LOC_Os05g49950NANA5+28566615..28567103hypothetical protein
LOC_Os05g49960OsAffx.27389.1.S1_at11/115+28568952..28569428hypothetical protein
LOC_Os05g49970Os.13493.1.S1_at11/115+28571458..28578090Translation initiation factor IF-2, chloroplast precursor, putative, expressed
LOC_Os05g49970Os.13493.1.S1_s_at11/115+28571458..28578090Translation initiation factor IF-2, chloroplast precursor, putative, expressed
LOC_Os05g49980Os.52474.1.S1_at11/115+28580017..28583324F-box domain containing protein, expressed
LOC_Os05g49990Os.32545.1.S1_at11/115+28583901..28585623expressed protein
LOC_Os05g50000OsAffx.15173.1.S1_x_at11/115+28588915..28590123hypothetical protein
LOC_Os05g50000OsAffx.15173.1.S1_at11/115+28588915..28590123hypothetical protein
LOC_Os05g50009NANA5+28591112..28591600NA
LOC_Os05g50020OsAffx.15174.1.S1_at11/115+28592944..28594149expressed protein
LOC_Os05g50030NANA5+28598837..28600840expressed protein
LOC_Os05g50040Os.10827.1.S1_x_at11/115+28602649..28605561transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g50040Os.46055.2.S1_x_at6/115+28602649..28605561transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g50050NANA5+28606283..28606852hypothetical protein
LOC_Os05g50060OsAffx.25936.7.S1_s_at11/115+28607379..28611119transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g50060OsAffx.25936.1.S1_s_at11/115+28607379..28611119transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g50060OsAffx.25936.1.S1_at7/115+28607379..28611119transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g50060OsAffx.25936.2.S1_x_at3/115+28607379..28611119transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g50060OsAffx.25936.5.S1_x_at2/115+28607379..28611119transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52474.1.S1_at--980--4671Chr05:28582814..28582838 (25 bp)
GCGGTAAATACACCAGTGCTGCCTA
LOC_Os05g49980
Os.52474.1.S1_at--581--2711Chr05:28582856..28582880 (25 bp)
AAGCACCTGAGCATTAGTTTGATAG
LOC_Os05g49980
Os.52474.1.S1_at--200--8831Chr05:28582875..28582899 (25 bp)
TGATAGCAGTATCGACACTTTCCCC
LOC_Os05g49980
Os.52474.1.S1_at--164--7071Chr05:28582970..28582994 (25 bp)
GTAAGGCACTGTCCATTAACTCTGT
LOC_Os05g49980
Os.52474.1.S1_at--791--131Chr05:28582984..28583008 (25 bp)
ATTAACTCTGTCCTGCTAACATAGC
LOC_Os05g49980
Os.52474.1.S1_at--59--2511Chr05:28583001..28583025 (25 bp)
AACATAGCTGTTCACTCTGGGTCCA
LOC_Os05g49980
Os.52474.1.S1_at--779--7691Chr05:28583019..28583043 (25 bp)
GGGTCCATTTATCTCAATCGTGTTC
LOC_Os05g49980
Os.52474.1.S1_at--536--3011Chr05:28583084..28583108 (25 bp)
GAATCGGTTTTTGCAAAATCCTCGG
LOC_Os05g49980
Os.52474.1.S1_at--541--4931Chr05:28583116..28583140 (25 bp)
GCAAATTCCTGAAAACCGCCATGAC
LOC_Os05g49980
Os.52474.1.S1_at--338--2811Chr05:28583156..28583180 (25 bp)
AAGATCTCTGGTTTCTGCTCTGCAA
LOC_Os05g49980
Os.52474.1.S1_at--1153--1431Chr05:28583214..28583238 (25 bp)
AGAACGTGGTGTCACTCGAGTCTCT
LOC_Os05g49980
Target Sequence 
GCGGTAAATACACCAGTGCTGCCTACCAAATTCCTCTACCTCAAGCACCTGAGCATTAGTTTGATAGCAGTATCGACACT
TTCCCCGTCCTATGATTATTTTTCTCTGGTTTCTTTCCTTGACGCTTCTCCTTCGTTGGAAACTTTTATCTTGGATGTAA
GGCACTGTCCATTAACTCTGTCCTGCTAACATAGCTGTTCACTCTGGGTCCATTTATCTCAATCGTGTTCTCCTTTCCAT
CTTCAGGTGCAGCAGCGAAGCATGGAGCATGAATCGGTTTTTGCAAAATCCTCGGGTTTGAGGCAAATTCCTGAAAACCG
CCATGACAGCCTCAAGACTGTGAAGATCTCTGGTTTCTGCTCTGCAAAGAGCTTGGTTGAGCTAACTTGTTATATTCTGA
AGAACGTGGTGTCACTCGAGTCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52474.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis