Browse Element(s) Details


OsAffx.15173.1.S1_at

Description tigr:9633.m04701
TID=OsAffx.15173.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5000011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49940Os.27218.1.A1_at11/115+28564193..28564952expressed protein
LOC_Os05g49950NANA5+28566615..28567103hypothetical protein
LOC_Os05g49960OsAffx.27389.1.S1_at11/115+28568952..28569428hypothetical protein
LOC_Os05g49970Os.13493.1.S1_at11/115+28571458..28578090Translation initiation factor IF-2, chloroplast precursor, putative, expressed
LOC_Os05g49970Os.13493.1.S1_s_at11/115+28571458..28578090Translation initiation factor IF-2, chloroplast precursor, putative, expressed
LOC_Os05g49980Os.52474.1.S1_at11/115+28580017..28583324F-box domain containing protein, expressed
LOC_Os05g49990Os.32545.1.S1_at11/115+28583901..28585623expressed protein
LOC_Os05g50000OsAffx.15173.1.S1_x_at11/115+28588915..28590123hypothetical protein
LOC_Os05g50000OsAffx.15173.1.S1_at11/115+28588915..28590123hypothetical protein
LOC_Os05g50009NANA5+28591112..28591600NA
LOC_Os05g50020OsAffx.15174.1.S1_at11/115+28592944..28594149expressed protein
LOC_Os05g50030NANA5+28598837..28600840expressed protein
LOC_Os05g50040Os.10827.1.S1_x_at11/115+28602649..28605561transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g50040Os.46055.2.S1_x_at6/115+28602649..28605561transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g50050NANA5+28606283..28606852hypothetical protein
LOC_Os05g50060OsAffx.25936.7.S1_s_at11/115+28607379..28611119transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g50060OsAffx.25936.1.S1_s_at11/115+28607379..28611119transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g50060OsAffx.25936.1.S1_at7/115+28607379..28611119transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g50060OsAffx.25936.2.S1_x_at3/115+28607379..28611119transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g50060OsAffx.25936.5.S1_x_at2/115+28607379..28611119transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g50070OsAffx.25437.1.S1_at3/115+28611715..28613698retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os05g50070OsAffx.5014.1.S1_at1/115+28611715..28613698retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os05g50070OsAffx.22766.1.S1_at1/115+28611715..28613698retrotransposon protein, putative, Ty1-copia subclass, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15173.1.S1_at--871--7511Chr05:28589467..28589491 (25 bp)
GTGGATCGTGATCCACGGTCTCCAC
LOC_Os05g50000
OsAffx.15173.1.S1_at--115--7971Chr05:28589465..28589489 (25 bp)
GGATCGTGATCCACGGTCTCCACGA
LOC_Os05g50000
OsAffx.15173.1.S1_at--19--6411Chr05:28589464..28589488 (25 bp)
GATCGTGATCCACGGTCTCCACGAT
LOC_Os05g50000
OsAffx.15173.1.S1_at--958--7371Chr05:28589460..28589484 (25 bp)
GTGATCCACGGTCTCCACGATGCGG
LOC_Os05g50000
OsAffx.15173.1.S1_at--195--6371Chr05:28589458..28589482 (25 bp)
GATCCACGGTCTCCACGATGCGGTC
LOC_Os05g50000
OsAffx.15173.1.S1_at--157--3971Chr05:28589452..28589476 (25 bp)
CGGTCTCCACGATGCGGTCCTCAGA
LOC_Os05g50000
OsAffx.15173.1.S1_at--380--3351Chr05:28589445..28589469 (25 bp)
CACGATGCGGTCCTCAGAGCCGCCG
LOC_Os05g50000
OsAffx.15173.1.S1_at--387--4411Chr05:28589330..28589354 (25 bp)
GCCAGGGCTGGGAGATCGAGCGCCG
LOC_Os05g50000
OsAffx.15173.1.S1_at--503--9451Chr05:28589086..28589110 (25 bp)
TCGGCATCAGCACCACGGCACGAGG
LOC_Os05g50000
OsAffx.15173.1.S1_at--985--8271Chr05:28589084..28589108 (25 bp)
GGCATCAGCACCACGGCACGAGGGA
LOC_Os05g50000
OsAffx.15173.1.S1_at--97--4972Chr05:28589083..28589107 (25 bp)
GCATCAGCACCACGGCACGAGGGAT
LOC_Os05g50000
Target Sequence 
GTGGATCGTGATCCACGGTCTCCACGATGCGGTCCTCAGAGCCGCCGCGATCGTCGGCCCGCGCCTCGTCATCATCGGCG
ACGTTCGCGTCAGCGACGCCCCTGCGGTGCTGGCTCTGCTGGACAAGGAGGGGGTGCGCCAGGGCTGGGAGATCGAGCGC
CGCCACCGCCTGGCCAGGCTTGCCAAGCTGGACCACGAGCTCGCCATCGTTCTGGAGGTCATCGTGCCGATGCTGATGCA
TACGCCGTTCCACATCGTCGCCGGCCGGGAGCTGCAGCGCTACGGGTCGTCGATTCAGCATCTGGCGGCGTCGATCTTCG
GCCCAGTCCACGCCCTCCACGCCGCCGTCCGCCCCGTCGGACGCTTCCTCCGCCGACATGCTCGGCATCAGCACCACGGC
ACGAGGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15173.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis