Browse Element(s) Details


OsAffx.5014.1.S1_at

Description tigr:9634.m03301
TID=OsAffx.5014.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc knuckle, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3493011/11Zinc knuckle family protein
LOC_Os05g500701/11retrotransposon protein, putative, Ty1-copia subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g34900OsAffx.15746.1.S1_at11/116+20293147..20294403hypothetical protein
LOC_Os06g34900Os.49802.1.S2_at1/116+20293147..20294403hypothetical protein
LOC_Os06g34910OsAffx.13264.1.S1_x_at4/116+20299384..20305565transposon protein, putative, Mutator sub-class
LOC_Os06g34910OsAffx.17017.1.S1_at3/116+20299384..20305565transposon protein, putative, Mutator sub-class
LOC_Os06g34910OsAffx.13264.1.S1_at3/116+20299384..20305565transposon protein, putative, Mutator sub-class
LOC_Os06g34910OsAffx.10233.1.S1_at2/116+20299384..20305565transposon protein, putative, Mutator sub-class
LOC_Os06g34910OsAffx.22682.2.S1_at2/116+20299384..20305565transposon protein, putative, Mutator sub-class
LOC_Os06g34920OsAffx.16430.1.S1_at1/116+20307338..20310697retrotransposon protein, putative, unclassified
LOC_Os06g34920OsAffx.24744.4.A1_at1/116+20307338..20310697retrotransposon protein, putative, unclassified
LOC_Os06g34930OsAffx.5014.1.S1_at11/116+20313564..20314273Zinc knuckle family protein
LOC_Os06g34930OsAffx.25437.1.S1_at1/116+20313564..20314273Zinc knuckle family protein
LOC_Os06g34940OsAffx.27944.1.S1_at3/116+20321475..20321708hypothetical protein
LOC_Os06g34940OsAffx.27944.1.S1_x_at3/116+20321475..20321708hypothetical protein
LOC_Os06g34950OsAffx.27945.1.S1_at7/116+20322526..20323937hypothetical protein
LOC_Os06g34950Os.57368.1.S1_at3/116+20322526..20323937hypothetical protein
LOC_Os06g34960OsAffx.15747.1.S1_at10/116+20325285..20333177Protein kinase domain containing protein, expressed
LOC_Os06g34970OsAffx.15748.1.S1_at11/116+20336991..20337407hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5014.1.S1_at--387--8412Chr06:20314112..20314136 (25 bp)
GGCCCGAGTACAAACTCTCAAGAGA
LOC_Os06g34930
OsAffx.5014.1.S1_at--98--6291Chr06:20314007..20314028 (22 bp)
GATGATTCGTTCTCTCGGCACGAAA
LOC_Os06g34930
OsAffx.5014.1.S1_at--1158--2211Chr06:20313869..20313893 (25 bp)
ACAATTGGATGTTTGCGGGCGTTCG
LOC_Os06g34930
OsAffx.5014.1.S1_at--136--8911Chr06:20313780..20313804 (25 bp)
TGAGCAACGGCTCACACGCGCTGAG
LOC_Os06g34930
OsAffx.5014.1.S1_at--762--1451Chr06:20313730..20313754 (25 bp)
AGAAGAGCTACGAGGCCTCTGGCAG
LOC_Os06g34930
OsAffx.5014.1.S1_at--243--891Chr06:20313718..20313742 (25 bp)
AGGCCTCTGGCAGTGTCACGAAGAA
LOC_Os06g34930
OsAffx.5014.1.S1_at--416--8231Chr06:20313647..20313671 (25 bp)
GGCAAGTTTGGACACTTCGCTGATG
LOC_Os06g34930
OsAffx.5014.1.S1_at--876--10631Chr06:20313632..20313656 (25 bp)
TTCGCTGATGAGTGTGACGAGCCTC
LOC_Os06g34930
OsAffx.5014.1.S1_at--1110--8931Chr06:20313618..20313642 (25 bp)
TGACGAGCCTCGGAAGATGACTAAG
LOC_Os06g34930
OsAffx.5014.1.S1_at--841--6311Chr06:20313603..20313627 (25 bp)
GATGACTAAGGCAGTGGCGCAGCTT
LOC_Os06g34930
OsAffx.5014.1.S1_at--573--8271Chr06:20313594..20313618 (25 bp)
GGCAGTGGCGCAGCTTGCAATTGCA
LOC_Os06g34930
Target Sequence 
GGCCCGAGTACAAACTCTCAAGAGAGTGCTTGATGATTCGTTCTCTCGGCACGAAAGTGGAGGAGACCACCGTCGTGGAG
AGGCTCTTGCATTCCGTTCCCGACAAGTTCCAATCCCTCATAAGCACCATCGAGCAGTGGGGGATGTGTCGGAGATGACG
GTGACGGAGACAATTGGATGTTTGCGGGCGTTCGAGGTGTCCTCCAAGGGGCGACGTCGTGAAAACGCAGGGGAGGAGCA
GCTGCTTATTGCAGGGGCTGAGCAACGGCTCACACGCGCTGAGTGGGAGGCCATTGTTGCTGAAGAGAAGAAGAGCTACG
AGGCCTCTGGCAGTGTCACGAAGAAGTTTCGCAGCAAGTTCGACAAGTCGAAGATTGAGTGCTGCAGGTGTGGCAAGTTT
GGACACTTCGCTGATGAGTGTGACGAGCCTCGGAAGATGACTAAGGCAGTGGCGCAGCTTGCAATTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5014.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis