Browse Element(s) Details


OsAffx.10233.1.S1_at

Description gb:NM_186510.1
DB_XREF= gi:34900105
GEN=OJ1116_C08.18
TID=OsAffx.10233.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GlimmerM etc. (OJ1116_C08.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g349102/11transposon protein, putative, Mutator sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g34870NANA6+20275504..20280210Zinc finger, C3HC4 type family protein
LOC_Os06g34880OsAffx.27942.1.S1_at1/116+20285764..20286147Zinc finger, C3HC4 type family protein
LOC_Os06g34890OsAffx.15745.1.S1_at11/116+20288016..20288432hypothetical protein
LOC_Os06g34900OsAffx.15746.1.S1_at11/116+20293147..20294403hypothetical protein
LOC_Os06g34900Os.49802.1.S2_at1/116+20293147..20294403hypothetical protein
LOC_Os06g34910OsAffx.13264.1.S1_x_at4/116+20299384..20305565transposon protein, putative, Mutator sub-class
LOC_Os06g34910OsAffx.17017.1.S1_at3/116+20299384..20305565transposon protein, putative, Mutator sub-class
LOC_Os06g34910OsAffx.13264.1.S1_at3/116+20299384..20305565transposon protein, putative, Mutator sub-class
LOC_Os06g34910OsAffx.10233.1.S1_at2/116+20299384..20305565transposon protein, putative, Mutator sub-class
LOC_Os06g34910OsAffx.22682.2.S1_at2/116+20299384..20305565transposon protein, putative, Mutator sub-class
LOC_Os06g34920OsAffx.16430.1.S1_at1/116+20307338..20310697retrotransposon protein, putative, unclassified
LOC_Os06g34920OsAffx.24744.4.A1_at1/116+20307338..20310697retrotransposon protein, putative, unclassified
LOC_Os06g34930OsAffx.5014.1.S1_at11/116+20313564..20314273Zinc knuckle family protein
LOC_Os06g34930OsAffx.25437.1.S1_at1/116+20313564..20314273Zinc knuckle family protein
LOC_Os06g34940OsAffx.27944.1.S1_at3/116+20321475..20321708hypothetical protein
LOC_Os06g34940OsAffx.27944.1.S1_x_at3/116+20321475..20321708hypothetical protein
LOC_Os06g34950OsAffx.27945.1.S1_at7/116+20322526..20323937hypothetical protein
LOC_Os06g34950Os.57368.1.S1_at3/116+20322526..20323937hypothetical protein
LOC_Os06g34960OsAffx.15747.1.S1_at10/116+20325285..20333177Protein kinase domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10233.1.S1_at--759--1971Chr07:6278235..6278259 (25 bp)
ACTCCTATCGCGCACTTGGTCGCTG
NONE
OsAffx.10233.1.S1_at--801--531Chr07:6278229..6278253 (25 bp)
ATCGCGCACTTGGTCGCTGCCGCTG
NONE
OsAffx.10233.1.S1_at--472--8932Chr07:6278100..6278124 (25 bp)
TGACCGACGCCACCCCGTGCAAGCG
NONE
OsAffx.10233.1.S1_at--363--7352Chr07:6278084..6278108 (25 bp)
GTGCAAGCGCGCTCTGAGAGAAAGC
NONE
OsAffx.10233.1.S1_at--366--5171Chr07:6278082..6278106 (25 bp)
GCAAGCGCGCTCTGAGAGAAAGCAT
NONE
OsAffx.10233.1.S1_at--555--5974Chr12:14091539..14091654 (24 bp)
GAGAAAGCATTATTTTAATCGGCGT
NONE
OsAffx.10233.1.S1_at--813--4875Chr11:9941391..9941411 (21 bp)
GCATTATTTTAATCGGCGTGGTGTC
NONE
OsAffx.10233.1.S1_at--619--3596Chr11:9941391..9941412 (22 bp)
CATTATTTTAATCGGCGTGGTGTCC
NONE
OsAffx.10233.1.S1_at--859--154Chr11:9941392..9941416 (25 bp)
ATTTTAATCGGCGTGGTGTCCACTG
NONE
OsAffx.10233.1.S1_at--1153--10492Chr07:6043695..6043715 (21 bp)
TTAATCGGCGTGGTGTCCACTGGTA
NONE
OsAffx.10233.1.S1_at--521--3051Chr07:6278051..6278075 (25 bp)
AATCGGCGTGGTGTCCACTGGTAAA
NONE
Target Sequence 
ACTCCTATCGCGCACTTGGTCGCTGCCGCTGCCACTCCGCTTGGCCGACACTGCCGCTCCACCGGCCACGCGCTCGTCCA
CCGCCGCTGCCACCCCGCTCCACTCCGCCAGCCGCCATCCTCGCCATCTTTGCCGTGACCGACGCCACCCCGTGCAAGCG
CGCTCTGAGAGAAAGCATTATTTTAATCGGCGTGGTGTCCACTGGTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10233.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis