Browse Element(s) Details


Os.13493.1.S1_at

Description gb:AK058719.1
DB_XREF= gi:32968737
TID=Os.13493.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.13493 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-019-E07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-019-E07, full insert sequence.
FL= gb:AK058719.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4997011/11Translation initiation factor IF-2, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49910Os.57367.1.S1_x_at11/115+28545588..28548920expressed protein
LOC_Os05g49910Os.57367.1.S1_at11/115+28545588..28548920expressed protein
LOC_Os05g49910Os.20347.1.S1_at8/115+28545588..28548920expressed protein
LOC_Os05g49920OsAffx.27388.1.S1_at11/115+28549790..28552533pentatricopeptide, putative, expressed
LOC_Os05g49930Os.47898.1.A1_at11/115+28557003..28558717GRAS family transcription factor containing protein, expressed
LOC_Os05g49940Os.27218.1.A1_at11/115+28564193..28564952expressed protein
LOC_Os05g49950NANA5+28566615..28567103hypothetical protein
LOC_Os05g49960OsAffx.27389.1.S1_at11/115+28568952..28569428hypothetical protein
LOC_Os05g49970Os.13493.1.S1_at11/115+28571458..28578090Translation initiation factor IF-2, chloroplast precursor, putative, expressed
LOC_Os05g49970Os.13493.1.S1_s_at11/115+28571458..28578090Translation initiation factor IF-2, chloroplast precursor, putative, expressed
LOC_Os05g49980Os.52474.1.S1_at11/115+28580017..28583324F-box domain containing protein, expressed
LOC_Os05g49990Os.32545.1.S1_at11/115+28583901..28585623expressed protein
LOC_Os05g50000OsAffx.15173.1.S1_x_at11/115+28588915..28590123hypothetical protein
LOC_Os05g50000OsAffx.15173.1.S1_at11/115+28588915..28590123hypothetical protein
LOC_Os05g50009NANA5+28591112..28591600NA
LOC_Os05g50020OsAffx.15174.1.S1_at11/115+28592944..28594149expressed protein
LOC_Os05g50030NANA5+28598837..28600840expressed protein
LOC_Os05g50040Os.10827.1.S1_x_at11/115+28602649..28605561transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g50040Os.46055.2.S1_x_at6/115+28602649..28605561transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006413biological_processtranslational initiation
GO:0003743molecular_functiontranslation initiation factor activity
GO:0008135molecular_functiontranslation factor activity, nucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13493.1.S1_at--1077--9831Chr05:28577236..28577529 (25 bp)
TAAAGGAGGTTGGTGCTGGGCTAGA
LOC_Os05g49970
Os.13493.1.S1_at--28--10051Chr05:28577544..28577568 (25 bp)
TAGATGATTTTGACGAATGGGAGGA
LOC_Os05g49970
Os.13493.1.S1_at--54--8871Chr05:28577572..28577596 (25 bp)
TGATGTCGTGGAGGCATTCAACACA
LOC_Os05g49970
Os.13493.1.S1_at--887--7191Chr05:28577576..28577600 (25 bp)
GTCGTGGAGGCATTCAACACAGTTA
LOC_Os05g49970
Os.13493.1.S1_at--1160--6191Chr05:28577582..28577606 (25 bp)
GAGGCATTCAACACAGTTAAGAAGA
LOC_Os05g49970
Os.13493.1.S1_at--581--4911Chr05:28577630..28577654 (25 bp)
GCTTCTGTGACTGCTGCTCTAAAGG
LOC_Os05g49970
Os.13493.1.S1_at--1162--7791Chr05:28577644..28577668 (25 bp)
TGCTCTAAAGGATGCCGGCGTCCAG
LOC_Os05g49970
Os.13493.1.S1_at--381--3931Chr05:28577659..28577683 (25 bp)
CGGCGTCCAGCTGTAGAAGTGGCAA
LOC_Os05g49970
Os.13493.1.S1_at--1012--5311Chr05:28577674..28577698 (25 bp)
GAAGTGGCAAAGCTGATAGGCATCC
LOC_Os05g49970
Os.13493.1.S1_at--446--5131Chr05:28577680..28577704 (25 bp)
GCAAAGCTGATAGGCATCCATCATA
LOC_Os05g49970
Os.13493.1.S1_at--249--5011Chr05:28577713..28577737 (25 bp)
GCAGGGGAATCGGAGCCAAATTTAT
LOC_Os05g49970
Target Sequence 
TAAAGGAGGTTGGTGCTGGGCTAGAGTGTGGCATTGGGGTAGATGATTTTGACGAATGGGAGGAAGGTGATGTCGTGGAG
GCATTCAACACAGTTAAGAAGACAAGAACCCTAGAGGAAGCCTCTGCTTCTGTGACTGCTGCTCTAAAGGATGCCGGCGT
CCAGCTGTAGAAGTGGCAAAGCTGATAGGCATCCATCATACAACAACTGCAGGGGAATCGGAGCCAAATTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13493.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis