Browse Element(s) Details


OsAffx.27388.1.S1_at

Description tigr:9633.m04693
TID=OsAffx.27388.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4992011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49850OsAffx.10048.1.S1_x_at1/115+28522656..28526918retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os05g49860OsAffx.10929.1.S1_x_at2/115+28528717..28529506Histone H2B, putative, expressed
LOC_Os05g49870NANA5+28530478..28533304retrotransposon protein, putative, unclassified
LOC_Os05g49880Os.11139.1.S1_at11/115+28534384..28538305Malate dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os05g49890Os.8152.1.S1_at11/115+28539165..28541469GTP-binding nuclear protein Ran/TC4, putative, expressed
LOC_Os05g49900Os.53085.1.S1_at11/115+28541952..28544278Fatty acid elongase, putative, expressed
LOC_Os05g49910Os.57367.1.S1_x_at11/115+28545588..28548920expressed protein
LOC_Os05g49910Os.57367.1.S1_at11/115+28545588..28548920expressed protein
LOC_Os05g49910Os.20347.1.S1_at8/115+28545588..28548920expressed protein
LOC_Os05g49920OsAffx.27388.1.S1_at11/115+28549790..28552533pentatricopeptide, putative, expressed
LOC_Os05g49930Os.47898.1.A1_at11/115+28557003..28558717GRAS family transcription factor containing protein, expressed
LOC_Os05g49940Os.27218.1.A1_at11/115+28564193..28564952expressed protein
LOC_Os05g49950NANA5+28566615..28567103hypothetical protein
LOC_Os05g49960OsAffx.27389.1.S1_at11/115+28568952..28569428hypothetical protein
LOC_Os05g49970Os.13493.1.S1_at11/115+28571458..28578090Translation initiation factor IF-2, chloroplast precursor, putative, expressed
LOC_Os05g49970Os.13493.1.S1_s_at11/115+28571458..28578090Translation initiation factor IF-2, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27388.1.S1_at--19--1691Chr05:28551805..28551829 (25 bp)
AGCCTTGTTGAATGGATGCCGGATC
LOC_Os05g49920
OsAffx.27388.1.S1_at--1076--591Chr05:28551820..28551844 (25 bp)
ATGCCGGATCCACCGACATGTTGAA
LOC_Os05g49920
OsAffx.27388.1.S1_at--464--2111Chr05:28551835..28551859 (25 bp)
ACATGTTGAACTTGGCGAGCTTGCT
LOC_Os05g49920
OsAffx.27388.1.S1_at--634--731Chr05:28551891..28551915 (25 bp)
ATGTTGCATATCATGTTCTTCTGTG
LOC_Os05g49920
OsAffx.27388.1.S1_at--1052--611Chr05:28551930..28551954 (25 bp)
ATGCTGGCAAATGGGCTCAAGTGGC
LOC_Os05g49920
OsAffx.27388.1.S1_at--659--7651Chr05:28552024..28552048 (25 bp)
GGGAGTAACTCACGCATTTCTTACA
LOC_Os05g49920
OsAffx.27388.1.S1_at--663--2711Chr05:28552116..28552140 (25 bp)
AAGCATGTGGTTTTGCTCCTGTTGA
LOC_Os05g49920
OsAffx.27388.1.S1_at--1045--10451Chr05:28552199..28552223 (25 bp)
TTAGCTGTAGCTTTTGGTTTGATCA
LOC_Os05g49920
OsAffx.27388.1.S1_at--553--6451Chr05:28552219..28552243 (25 bp)
GATCAATACTACACCTGGTACCACT
LOC_Os05g49920
OsAffx.27388.1.S1_at--1102--3891Chr05:28552233..28552257 (25 bp)
CTGGTACCACTATTTCTGTCACAAA
LOC_Os05g49920
OsAffx.27388.1.S1_at--1089--5431Chr05:28552258..28552282 (25 bp)
GAACCGATACACTTGCCAGAGTTGT
LOC_Os05g49920
Target Sequence 
AGCCTTGTTGAATGGATGCCGGATCCACCGACATGTTGAACTTGGCGAGCTTGCTGCAAAAGTTATCCTTGAGTTGGAAC
CTAATGATGTTGCATATCATGTTCTTCTGTGTGATTTATATACTGATGCTGGCAAATGGGCTCAAGTGGCTAGAGTGAGA
AAAACCATGCGAGAGAAGGGATTGGAGCAAGATAATGGATGTAGCTGGGTTGAGGTTAAGGGAGTAACTCACGCATTTCT
TACAGATGATGAATCACATCCACAGATAAAAGAAATAAATGTTGTTCTACATGGCATATATGAGCGAATGAAAGCATGTG
GTTTTGCTCCTGTTGAGTCCTTAGAAGATAAAGAAGTATCCGAGGACGACATCTTGTGCGGTCACAGTGAAAGATTAGCT
GTAGCTTTTGGTTTGATCAATACTACACCTGGTACCACTATTTCTGTCACAAAGAACCGATACACTTGCCAGAGTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27388.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis