Browse Element(s) Details


Os.11139.1.S1_at

Description gb:AK073698.1
DB_XREF= gi:32983721
TID=Os.11139.1
CNT=25
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11139 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033057I02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033057I02, full insert sequence.
FL= gb:AK073698.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4988011/11Malate dehydrogenase, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49820OsAffx.15171.1.S1_at11/115+28505944..28510533hypothetical protein
LOC_Os05g49820Os.47086.1.S1_at1/115+28505944..28510533hypothetical protein
LOC_Os05g49830OsAffx.27387.2.S1_at11/115+28514304..28515613Lipase family protein, expressed
LOC_Os05g49840Os.54760.1.S1_at9/115+28515675..28519994Lipase family protein, expressed
LOC_Os05g49850OsAffx.10048.1.S1_x_at1/115+28522656..28526918retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os05g49860OsAffx.10929.1.S1_x_at2/115+28528717..28529506Histone H2B, putative, expressed
LOC_Os05g49870NANA5+28530478..28533304retrotransposon protein, putative, unclassified
LOC_Os05g49880Os.11139.1.S1_at11/115+28534384..28538305Malate dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os05g49890Os.8152.1.S1_at11/115+28539165..28541469GTP-binding nuclear protein Ran/TC4, putative, expressed
LOC_Os05g49900Os.53085.1.S1_at11/115+28541952..28544278Fatty acid elongase, putative, expressed
LOC_Os05g49910Os.57367.1.S1_x_at11/115+28545588..28548920expressed protein
LOC_Os05g49910Os.57367.1.S1_at11/115+28545588..28548920expressed protein
LOC_Os05g49910Os.20347.1.S1_at8/115+28545588..28548920expressed protein
LOC_Os05g49920OsAffx.27388.1.S1_at11/115+28549790..28552533pentatricopeptide, putative, expressed
LOC_Os05g49930Os.47898.1.A1_at11/115+28557003..28558717GRAS family transcription factor containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0042579cellular_componentmicrobody
GO:0016615molecular_functionmalate dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11139.1.S1_at--286--1071Chr05:28536269..28536293 (25 bp)
AGGGTTCTGCAACATTGTCTATGGC
LOC_Os05g49880
Os.11139.1.S1_at--81--6711Chr05:28535323..28535347 (25 bp)
GTTCCTGATGTTGTAGAGTGCTCTT
LOC_Os05g49880
Os.11139.1.S1_at--817--8651Chr05:28534727..28534751 (25 bp)
TGGGCCAGCTTTCCGAGTTTGAGAA
LOC_Os05g49880
Os.11139.1.S1_at--657--2891Chr05:28534683..28534707 (25 bp)
AAGGGTGAGCTCAAGTCTTCGATTG
LOC_Os05g49880
Os.11139.1.S1_at--869--1071Chr05:28534655..28534679 (25 bp)
AGGGCATCAAGTTTGCTCACGCGAA
LOC_Os05g49880
Os.11139.1.S1_at--972--10371Chr05:28534569..28534593 (25 bp)
TTTTGGTTTGACTGTTGTTCTGCCC
LOC_Os05g49880
Os.11139.1.S1_at--471--2271Chr05:28534506..28534530 (25 bp)
AAATCTTGCGGCTTGATGCCAACCT
LOC_Os05g49880
Os.11139.1.S1_at--688--8971Chr05:28534463..28534487 (25 bp)
TGAAACAGCGACTCCGGTGCTATTT
LOC_Os05g49880
Os.11139.1.S1_at--722--7291Chr05:28534447..28534471 (25 bp)
GTGCTATTTTTCACCTTGTACCTGA
LOC_Os05g49880
Os.11139.1.S1_at--438--5451Chr05:28534409..28534433 (25 bp)
GAACCCAAATCATGACCCGAGTGTC
LOC_Os05g49880
Os.11139.1.S1_at--488--3931Chr05:28534385..28534409 (25 bp)
CGGTCTTCAGTTTGTTGGGCGATTA
LOC_Os05g49880
Target Sequence 
AGGGTTCTGCAACATTGTCTATGGCATATGCTGGTGCGGTATTTGCAGATGCGTGCTTGAAGGGGCTNAATGGAGTTCCT
GATGTTGTAGAGTGCTCTTTTGTGCAATCAACAGTAACAGAGCTGCCATTCTTCGCCTCAAAGGTAAGGCTTGGCAAGAA
CGGAGTGGAGGAAGTACTTGGGCTGGGCCAGCTTTCCGAGTTTGAGAAGGAGGGTCTGGAGAACCTGAAGGGTGAGCTCA
AGTCTTCGATTGAGAAGGGCATCAAGTTTGCTCACGCGAACTAGGCAACCTATGCAGATTCTAACAATTCAAATGTGAAC
TAGAGGGGGGGTCCCTCGAATTTTTGGTTTGACTGTTGTTCTGCCCCGATCTGCTGGGGCACCGAGATGTTGTGCTCCAG
AATAAAATCTTGCGGCTTGATGCCAACCTGAACTCAAAACTTGTACCTGAAACAGCGACTCCGGTGCTATTTTTCACCTT
GTACCTGAAACTGCGTACAGTGAACCCAAATCATGACCCGAGTGTCGGTCTTCAGTTTGTTGGGCGATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11139.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis