Browse Element(s) Details


Os.54760.1.S1_at

Description gb:AK106699.1
DB_XREF= gi:32991908
TID=Os.54760.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54760 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-114-E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-114-E01, full insert sequence.
FL= gb:AK106699.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g498409/11Lipase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49780Os.28038.1.S1_at10/115+28489163..28491882CCAAT-binding transcription factor subunit HAP3C, putative, expressed
LOC_Os05g49790OsAffx.4671.1.S1_x_at11/115+28494793..28495209expressed protein
LOC_Os05g49790OsAffx.4671.1.S1_at11/115+28494793..28495209expressed protein
LOC_Os05g49800Os.4761.1.S1_at11/115+28495967..28499343Ketol-acid reductoisomerase, chloroplast precursor, putative, expressed
LOC_Os05g49800Os.46673.1.S1_x_at1/115+28495967..28499343Ketol-acid reductoisomerase, chloroplast precursor, putative, expressed
LOC_Os05g49800Os.4767.2.S1_x_at1/115+28495967..28499343Ketol-acid reductoisomerase, chloroplast precursor, putative, expressed
LOC_Os05g49810OsAffx.4672.1.S1_at11/115+28502389..28505608Armadillo/beta-catenin-like repeat family protein
LOC_Os05g49820OsAffx.15171.1.S1_at11/115+28505944..28510533hypothetical protein
LOC_Os05g49820Os.47086.1.S1_at1/115+28505944..28510533hypothetical protein
LOC_Os05g49830OsAffx.27387.2.S1_at11/115+28514304..28515613Lipase family protein, expressed
LOC_Os05g49840Os.54760.1.S1_at9/115+28515675..28519994Lipase family protein, expressed
LOC_Os05g49850OsAffx.10048.1.S1_x_at1/115+28522656..28526918retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os05g49860OsAffx.10929.1.S1_x_at2/115+28528717..28529506Histone H2B, putative, expressed
LOC_Os05g49870NANA5+28530478..28533304retrotransposon protein, putative, unclassified
LOC_Os05g49880Os.11139.1.S1_at11/115+28534384..28538305Malate dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os05g49890Os.8152.1.S1_at11/115+28539165..28541469GTP-binding nuclear protein Ran/TC4, putative, expressed
LOC_Os05g49900Os.53085.1.S1_at11/115+28541952..28544278Fatty acid elongase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0004806molecular_functiontriacylglycerol lipase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54760.1.S1_at--325--3851Chr05:28516214..28516238 (25 bp)
CTGAGGGCGCTCCACGTCAAGAACG
LOC_Os05g49840
Os.54760.1.S1_at--1022--7351Chr05:28516139..28516163 (25 bp)
GTGAAGCTGCGCATCAGCACCAGCC
LOC_Os05g49840
Os.54760.1.S1_at--87--7751Chr05:28515931..28515955 (25 bp)
GGTGGGTCTCCAAGAACAGGTGCAT
LOC_Os05g49840
Os.54760.1.S1_at--914--4231NONE
CCGATGGGCATTGGGCGCTCCACGA
NONE
Os.54760.1.S1_at--967--8391Chr05:28515882..28515906 (25 bp)
GGCGCTCCACGATTTCGAGCAAATT
LOC_Os05g49840
Os.54760.1.S1_at--119--5951Chr05:28515866..28515890 (25 bp)
GAGCAAATTTAAGCTCTCGATTTCG
LOC_Os05g49840
Os.54760.1.S1_at--1109--2851Chr05:28515813..28515837 (25 bp)
AAGTGCTCGTTAATGGGCTTGACAC
LOC_Os05g49840
Os.54760.1.S1_at--807--2951Chr05:28515802..28515826 (25 bp)
AATGGGCTTGACACGTCGAATAAAT
LOC_Os05g49840
Os.54760.1.S1_at--109--2551Chr05:28515737..28515761 (25 bp)
AACTCTGTCCAGTCAAATGCATGTG
LOC_Os05g49840
Os.54760.1.S1_at--877--2311Chr05:28515687..28515711 (25 bp)
AAAGGTATTGATTTGGACACGTTGA
LOC_Os05g49840
Os.54760.1.S1_at--308--3331Chr05:28515670..28515694 (25 bp)
CACGTTGAGATGTCCAGTAATTATT
NONE
Target Sequence 
CTGAGGGCGCTCCACGTCAAGAACGCCGGCGACGTGGTGCCCATGTACCCGCCGCTGGGCTACGTGGACGTGGCCGTGAA
GCTGCGCATCAGCACCAGCCGGTCGCCGTACCTGCGGTCGCCGGGGACCATCGAGACGCTGCACAACCTCGAGTGCTACC
TCCACGGCGTCGCCGGCGAGCAGGGCAGCGCCGGCGGGTTCAAGCTGGAGGTCGACCGCGACGTCGCGCTGGCGAACAAG
GGCGTCGACGCGCTCAAGGACAAGTACCCCGTGCCGCCCCGGTGGTGGGTCTCCAAGAACAGGTGCATGGTCAAGGACGC
CGATGGGCATTGGGCGCTCCACGATTTCGAGCAAATTTAAGCTCTCGATTTCGAAAAATTTGCAAAATGGATTACGTATA
GAAGTGCTCGTTAATGGGCTTGACACGTCGAATAAATGGGATTTCCCCCTCATATCACATAATTCATTTGTAAATAAAAC
TCTGTCCAGTCAAATGCATGTGTTGATTTGGACATTGTTACAGATACAAAGGTATTGATTTGGACACGTTGAGATGTCCA
GTAATTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54760.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis