Browse Element(s) Details


OsAffx.4672.1.S1_at

Description tigr:9633.m04680
TID=OsAffx.4672.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Armadillobeta-catenin-like repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4981011/11Armadillo/beta-catenin-like repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49780Os.28038.1.S1_at10/115+28489163..28491882CCAAT-binding transcription factor subunit HAP3C, putative, expressed
LOC_Os05g49790OsAffx.4671.1.S1_x_at11/115+28494793..28495209expressed protein
LOC_Os05g49790OsAffx.4671.1.S1_at11/115+28494793..28495209expressed protein
LOC_Os05g49800Os.4761.1.S1_at11/115+28495967..28499343Ketol-acid reductoisomerase, chloroplast precursor, putative, expressed
LOC_Os05g49800Os.46673.1.S1_x_at1/115+28495967..28499343Ketol-acid reductoisomerase, chloroplast precursor, putative, expressed
LOC_Os05g49800Os.4767.2.S1_x_at1/115+28495967..28499343Ketol-acid reductoisomerase, chloroplast precursor, putative, expressed
LOC_Os05g49810OsAffx.4672.1.S1_at11/115+28502389..28505608Armadillo/beta-catenin-like repeat family protein
LOC_Os05g49820OsAffx.15171.1.S1_at11/115+28505944..28510533hypothetical protein
LOC_Os05g49820Os.47086.1.S1_at1/115+28505944..28510533hypothetical protein
LOC_Os05g49830OsAffx.27387.2.S1_at11/115+28514304..28515613Lipase family protein, expressed
LOC_Os05g49840Os.54760.1.S1_at9/115+28515675..28519994Lipase family protein, expressed
LOC_Os05g49850OsAffx.10048.1.S1_x_at1/115+28522656..28526918retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os05g49860OsAffx.10929.1.S1_x_at2/115+28528717..28529506Histone H2B, putative, expressed
LOC_Os05g49870NANA5+28530478..28533304retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4672.1.S1_at--202--3791Chr05:28505044..28505068 (25 bp)
CTCCCTGGACCGGAAGACGTCGGAG
LOC_Os05g49810
OsAffx.4672.1.S1_at--334--691Chr05:28505165..28505189 (25 bp)
ATGACGTGGCACGACGCTCCGCGGT
LOC_Os05g49810
OsAffx.4672.1.S1_at--1009--7771Chr05:28505187..28505211 (25 bp)
GGTGCCAGGAGCACGCCGCGTACCT
LOC_Os05g49810
OsAffx.4672.1.S1_at--803--6371Chr05:28505335..28505359 (25 bp)
GATCCTGCAGTGGTTCAAGGAGGAA
LOC_Os05g49810
OsAffx.4672.1.S1_at--1043--1811Chr05:28505457..28505481 (25 bp)
ACGCCGTGGACAGGATAGTGAAGCA
LOC_Os05g49810
OsAffx.4672.1.S1_at--711--8151Chr05:28505493..28505517 (25 bp)
GGAACATGAAGTCCATATTGCGCAG
LOC_Os05g49810
OsAffx.4672.1.S1_at--555--5331Chr05:28505500..28505524 (25 bp)
GAAGTCCATATTGCGCAGAGCCACG
LOC_Os05g49810
OsAffx.4672.1.S1_at--312--231Chr05:28505507..28505531 (25 bp)
ATATTGCGCAGAGCCACGGCGTCCG
LOC_Os05g49810
OsAffx.4672.1.S1_at--368--3951Chr05:28505526..28505550 (25 bp)
CGTCCGTGGACCTGACCAGTGTGAA
LOC_Os05g49810
OsAffx.4672.1.S1_at--963--8091Chr05:28505533..28505557 (25 bp)
GGACCTGACCAGTGTGAAGCTGCTG
LOC_Os05g49810
OsAffx.4672.1.S1_at--880--1591Chr05:28505550..28505574 (25 bp)
AGCTGCTGGTTGGAAGCTCTAGCTC
LOC_Os05g49810
Target Sequence 
CTCCCTGGACCGGAAGACGTCGGAGGCGGCGCTGTCCGTCCTCGGCGACCTGGCGGCGACCGCGGCGGGGAGGGAGGAGA
TGGAGGAGGACGAGGCGGCGCCGAGGGCGCTCGTGGAGGCCATGACGTGGCACGACGCTCCGCGGTGCCAGGAGCACGCC
GCGTACCTCGCCATGGTGCTCGCGCACGGCAGCCGGCTGCAGCGGCGGCGGATGCGCCGGTTCGGCGTCGTGCAGGCGCT
CCTCGAGGTGTCCCTCCTCGGGAGCCCCCTGGCGCAGAGGAGGGCGGCCAAGATCCTGCAGTGGTTCAAGGAGGAAGGGC
AGGACAGGATCAGGGCGCACTCCGGCCCTCGCATGGAGGGCGCGTCGTCGGCGTCGTGCGACGACGGCGGCGAGGGGGCC
AAGGATCGCCGGAACGCCGTGGACAGGATAGTGAAGCAGAGCCTCGACAGGAACATGAAGTCCATATTGCGCAGAGCCAC
GGCGTCCGTGGACCTGACCAGTGTGAAGCTGCTGGTTGGAAGCTCTAGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4672.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis