Browse Element(s) Details


Os.4761.1.S1_at

Description gb:AK065295.1
DB_XREF= gi:32975313
TID=Os.4761.1
CNT=37
FEA=FLmRNA
TIER=FL+Stack
STK=17
UG=Os.4761 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002N13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002N13, full insert sequence.
FL= gb:AK065295.1 gb:AK061892.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4980011/11Ketol-acid reductoisomerase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49770Os.5124.1.S1_s_at11/115+28468040..28474037CTP synthase, putative, expressed
LOC_Os05g49770Os.5124.1.S1_at11/115+28468040..28474037CTP synthase, putative, expressed
LOC_Os05g49770Os.24180.1.A1_s_at1/115+28468040..28474037CTP synthase, putative, expressed
LOC_Os05g49770Os.14993.1.A1_at1/115+28468040..28474037CTP synthase, putative, expressed
LOC_Os05g49780Os.28038.1.S1_at10/115+28489163..28491882CCAAT-binding transcription factor subunit HAP3C, putative, expressed
LOC_Os05g49790OsAffx.4671.1.S1_x_at11/115+28494793..28495209expressed protein
LOC_Os05g49790OsAffx.4671.1.S1_at11/115+28494793..28495209expressed protein
LOC_Os05g49800Os.4761.1.S1_at11/115+28495967..28499343Ketol-acid reductoisomerase, chloroplast precursor, putative, expressed
LOC_Os05g49800Os.46673.1.S1_x_at1/115+28495967..28499343Ketol-acid reductoisomerase, chloroplast precursor, putative, expressed
LOC_Os05g49800Os.4767.2.S1_x_at1/115+28495967..28499343Ketol-acid reductoisomerase, chloroplast precursor, putative, expressed
LOC_Os05g49810OsAffx.4672.1.S1_at11/115+28502389..28505608Armadillo/beta-catenin-like repeat family protein
LOC_Os05g49820OsAffx.15171.1.S1_at11/115+28505944..28510533hypothetical protein
LOC_Os05g49820Os.47086.1.S1_at1/115+28505944..28510533hypothetical protein
LOC_Os05g49830OsAffx.27387.2.S1_at11/115+28514304..28515613Lipase family protein, expressed
LOC_Os05g49840Os.54760.1.S1_at9/115+28515675..28519994Lipase family protein, expressed
LOC_Os05g49850OsAffx.10048.1.S1_x_at1/115+28522656..28526918retrotransposon protein, putative, Ty1-copia subclass, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009082biological_processbranched chain family amino acid biosynthesis
GO:0005739cellular_componentmitochondrion
GO:0004455molecular_functionketol-acid reductoisomerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4761.1.S1_at--381--1991Chr05:28496639..28496663 (25 bp)
ACTGCTGGAGTCTACGTTGCACTGA
LOC_Os05g49800
Os.4761.1.S1_at--451--6231Chr05:28496497..28496637 (25 bp)
GATGGCTCAGATCGAGGTCCTTAGA
LOC_Os05g49800
Os.4761.1.S1_at--157--1471Chr05:28496471..28496495 (25 bp)
AGAAGGGTCACTCCTACTCAGAGAT
LOC_Os05g49800
Os.4761.1.S1_at--845--5991Chr05:28496439..28496463 (25 bp)
GAGAGCGTCATCGAGTCCGTGGACT
LOC_Os05g49800
Os.4761.1.S1_at--766--5731Chr05:28496356..28496380 (25 bp)
GACGGCTCGTCTGGGATCAAGGAAA
LOC_Os05g49800
Os.4761.1.S1_at--399--5811Chr05:28496305..28496329 (25 bp)
GACCCAGCAAGCATTCGTGACAGTG
LOC_Os05g49800
Os.4761.1.S1_at--33--1371Chr05:28496143..28496167 (25 bp)
AGAGCTCCGGCAGTCATCGTAGAGT
LOC_Os05g49800
Os.4761.1.S1_at--1113--7631Chr05:28496100..28496124 (25 bp)
GGGAGCTTGCATCTTGTTACAGTTT
LOC_Os05g49800
Os.4761.1.S1_at--527--10111Chr05:28496061..28496085 (25 bp)
TATGTGTGTGCGTGACTGTCTGAAC
LOC_Os05g49800
Os.4761.1.S1_at--873--7171Chr05:28496044..28496068 (25 bp)
GTCTGAACTTGTGAGCTTGCCATCA
LOC_Os05g49800
Os.4761.1.S1_at--455--1051Chr05:28496020..28496044 (25 bp)
AGGTGACCTGGAACTGGCCTGAGCA
LOC_Os05g49800
Target Sequence 
ACTGCTGGAGTCTACGTTGCACTGATGATGGCTCAGATCGAGGTCCTTAGAAAGAAGGGTCACTCCTACTCAGAGATCAT
CAACGAGAGCGTCATCGAGTCCGTGGACTCACTGAACCCCTTCATGCATGCTCGTGGAGTGGCCTTCATGGTTGACAACT
GCTCAACGACGGCTCGTCTGGGATCAAGGAAATGGGCGCCACGCTTCGACTACATCCTGACCCAGCAAGCATTCGTGACA
GTGGACAAGGATGCTCCCATCAACCAGGACCTCATCAGCAACTTCATGTCCGACCCCGTCCATGGCGCAATCGAGGTGTG
CGCTGAGCTGCGGCCCACCGTCGACATCTCCGTGCCTGCCAACGCCGATTTCGTGCGCCCAGAGCTCCGGCAGTCATCGT
AGAGTGAGATAAGATAATCTCAAGGGAGCTTGCATCTTGTTACAGTTTGTCCGAGAGTATTGTATGTGTGTGCGTGACTG
TCTGAACTTGTGAGCTTGCCATCAGGTGACCTGGAACTGGCCTGAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4761.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis