Browse Element(s) Details


Os.28038.1.S1_at

Description gb:AB095440.1
DB_XREF= gi:30409462
GEN=OsHAP3C
TID=Os.28038.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28038 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsHAP3C mRNA for HAP3, complete cds.
PROD=HAP3
FL= gb:AB095440.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4978010/11CCAAT-binding transcription factor subunit HAP3C, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49760Os.2326.1.S1_s_at11/115+28464299..28468696Isocitrate dehydrogenase, putative, expressed
LOC_Os05g49760OsAffx.4669.1.S1_at9/115+28464299..28468696Isocitrate dehydrogenase, putative, expressed
LOC_Os05g49770Os.5124.1.S1_s_at11/115+28468040..28474037CTP synthase, putative, expressed
LOC_Os05g49770Os.5124.1.S1_at11/115+28468040..28474037CTP synthase, putative, expressed
LOC_Os05g49770Os.24180.1.A1_s_at1/115+28468040..28474037CTP synthase, putative, expressed
LOC_Os05g49770Os.14993.1.A1_at1/115+28468040..28474037CTP synthase, putative, expressed
LOC_Os05g49780Os.28038.1.S1_at10/115+28489163..28491882CCAAT-binding transcription factor subunit HAP3C, putative, expressed
LOC_Os05g49790OsAffx.4671.1.S1_x_at11/115+28494793..28495209expressed protein
LOC_Os05g49790OsAffx.4671.1.S1_at11/115+28494793..28495209expressed protein
LOC_Os05g49800Os.4761.1.S1_at11/115+28495967..28499343Ketol-acid reductoisomerase, chloroplast precursor, putative, expressed
LOC_Os05g49800Os.46673.1.S1_x_at1/115+28495967..28499343Ketol-acid reductoisomerase, chloroplast precursor, putative, expressed
LOC_Os05g49800Os.4767.2.S1_x_at1/115+28495967..28499343Ketol-acid reductoisomerase, chloroplast precursor, putative, expressed
LOC_Os05g49810OsAffx.4672.1.S1_at11/115+28502389..28505608Armadillo/beta-catenin-like repeat family protein
LOC_Os05g49820OsAffx.15171.1.S1_at11/115+28505944..28510533hypothetical protein
LOC_Os05g49820Os.47086.1.S1_at1/115+28505944..28510533hypothetical protein
LOC_Os05g49830OsAffx.27387.2.S1_at11/115+28514304..28515613Lipase family protein, expressed
LOC_Os05g49840Os.54760.1.S1_at9/115+28515675..28519994Lipase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0016602cellular_componentCCAAT-binding factor complex
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28038.1.S1_at--648--4271NONE
CCTGGATCATCGTTTGAAGGCATGT
NONE
Os.28038.1.S1_at--67--1031Chr05:28491648..28491672 (25 bp)
AGGGAAAGAACGCTCCAGCATCCTG
LOC_Os05g49780
Os.28038.1.S1_at--395--4791Chr05:28491659..28491683 (25 bp)
GCTCCAGCATCCTGTTATGTTGTAA
LOC_Os05g49780
Os.28038.1.S1_at--904--2711Chr05:28491682..28491706 (25 bp)
AAGCAGGATGCTTCTAAAGTTCCAA
LOC_Os05g49780
Os.28038.1.S1_at--870--6671Chr05:28491700..28491724 (25 bp)
GTTCCAATACCTTGTTACCACGAAT
LOC_Os05g49780
Os.28038.1.S1_at--873--9951Chr05:28491715..28491739 (25 bp)
TACCACGAATGTTAGTCGTCGTTCT
LOC_Os05g49780
Os.28038.1.S1_at--742--8791Chr05:28491748..28491772 (25 bp)
TGTTCTTGTGTTAGCCAGGATGTCC
LOC_Os05g49780
Os.28038.1.S1_at--553--6931Chr05:28491782..28491806 (25 bp)
GTAGGTTCTAGTTCAGTCGTGTGTT
LOC_Os05g49780
Os.28038.1.S1_at--343--9432Chr05:28491798..28491822 (25 bp)
TCGTGTGTTGTGTGGTTGTGTCTAA
LOC_Os05g49780
Os.28038.1.S1_at--539--7131Chr05:28491817..28491841 (25 bp)
GTCTAACCATATTTGGCCGTTTCCG
LOC_Os05g49780
Os.28038.1.S1_at--310--10671Chr05:28491837..28491861 (25 bp)
TTCCGGCTGTCCTGCATATGCTAAA
LOC_Os05g49780
Target Sequence 
CCTGGATCATCGTTTGAAGGCATGTAGGACGAGGAGTGTGATAGCATCTAGGAAGGAGAACCATCGTTTTTAGGGAAAGA
ACGCTCCAGCATCCTGTTATGTTGTAAGCAGGATGCTTCTAAAGTTCCAATACCTTGTTACCACGAATGTTAGTCGTCGT
TCTTTTTGAAATGTTCTTGTGTTAGCCAGGATGTCCAAATTTGTTGTAGGTTCTAGTTCAGTCGTGTGTTGTGTGGTTGT
GTCTAACCATATTTGGCCGTTTCCGGCTGTCCTGCATATGCTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28038.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis