Browse Element(s) Details


Os.2326.1.S1_s_at

Description gb:AF155334.1
DB_XREF= gi:5007085
TID=Os.2326.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2326 (NCBI UniGene Cluster)
DEF=Oryza sativa NADP-specific isocitrate dehydrogenase mRNA, complete cds.
PROD=NADP-specific isocitrate dehydrogenase
FL= gb:AF155334.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4976011/11Isocitrate dehydrogenase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49730Os.50134.1.S1_at11/115+28440543..28442743Protein phosphatase 2C containing protein, expressed
LOC_Os05g49730Os.50134.2.S1_at10/115+28440543..28442743Protein phosphatase 2C containing protein, expressed
LOC_Os05g49740Os.54298.1.S1_at11/115+28450941..28453653pentatricopeptide, putative, expressed
LOC_Os05g49750Os.18409.1.S1_at11/115+28456444..28460577expressed protein
LOC_Os05g49760Os.2326.1.S1_s_at11/115+28464299..28468696Isocitrate dehydrogenase, putative, expressed
LOC_Os05g49760OsAffx.4669.1.S1_at9/115+28464299..28468696Isocitrate dehydrogenase, putative, expressed
LOC_Os05g49770Os.5124.1.S1_s_at11/115+28468040..28474037CTP synthase, putative, expressed
LOC_Os05g49770Os.5124.1.S1_at11/115+28468040..28474037CTP synthase, putative, expressed
LOC_Os05g49770Os.24180.1.A1_s_at1/115+28468040..28474037CTP synthase, putative, expressed
LOC_Os05g49770Os.14993.1.A1_at1/115+28468040..28474037CTP synthase, putative, expressed
LOC_Os05g49780Os.28038.1.S1_at10/115+28489163..28491882CCAAT-binding transcription factor subunit HAP3C, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0005739cellular_componentmitochondrion
GO:0004450molecular_functionisocitrate dehydrogenase (NADP+) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2326.1.S1_s_at--300--3451Chr05:28467030..28467222 (25 bp)
CAGTTTTGGTATGTCCTGATGGGAA
LOC_Os05g49760
Os.2326.1.S1_s_at--643--8991Chr05:28467235..28467259 (25 bp)
TGAAGCTGCCCATGGGACTGTCACC
LOC_Os05g49760
Os.2326.1.S1_s_at--1000--4231Chr05:28467259..28467283 (25 bp)
CCGTCATTACCGTGTTCATCAGAAA
LOC_Os05g49760
Os.2326.1.S1_s_at--619--10691Chr05:28467309..28467333 (25 bp)
TTGCCTCAATCTTTGCCTGGACAAG
LOC_Os05g49760
Os.2326.1.S1_s_at--257--3011Chr05:28467543..28467567 (25 bp)
AATGCTAGGCTACTGGACTTCACTC
LOC_Os05g49760
Os.2326.1.S1_s_at--468--1871Chr05:28467554..28467578 (25 bp)
ACTGGACTTCACTCAGAAGCTTGAA
LOC_Os05g49760
Os.2326.1.S1_s_at--623--2691Chr05:28467577..28467601 (25 bp)
AAGCTGCCTGCATTGGCGCTGTCGA
LOC_Os05g49760
Os.2326.1.S1_s_at--251--3771Chr05:28467628..28467652 (25 bp)
CTCTGCTTGTTCACGGATCTTCAAA
LOC_Os05g49760
Os.2326.1.S1_s_at--133--6431Chr05:28467643..28467768 (25 bp)
GATCTTCAAATGTCACGAGGAGTCA
LOC_Os05g49760
Os.2326.1.S1_s_at--1097--5771Chr05:28467806..28467830 (25 bp)
GACGAGCTCAGATCAAGGCTGGCAG
LOC_Os05g49760
Os.2326.1.S1_s_at--581--911Chr05:28467821..28467845 (25 bp)
AGGCTGGCAGCCAACTAAAGCTAAT
LOC_Os05g49760
Target Sequence 
CAGTTTTGGTATGTCCTGATGGGAAAACCATTGAAGCTGAAGCTGCCCATGGGACTGTCACCCGTCATTACCGTGTTCAT
CAGAAAGGTGGTGAAACTAGCACAAACAGCATTGCCTCAATCTTTGCCTGGACAAGAGGACTTGCACACAGGGCAAAGCT
AGATGACAATGCTAGGCTACTGGACTTCACTCAGAAGCTTGAAGCTGCCTGCATTGGCGCTGTCGAGTCTGGGAAGATGA
CCAAGGACCTTGCTCTGCTTGTTCACGGATCTTCAAATGTCACGAGGAGTCATTACCTGAACACTGAAGAGTTNATCGAT
GCTGTTGCNGACGAGCTCAGATCAAGGCTGGCAGCCAACTAAAGCTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2326.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis