Browse Element(s) Details


Os.18409.1.S1_at

Description gb:AK066560.1
DB_XREF= gi:32976578
TID=Os.18409.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18409 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013072M24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013072M24, full insert sequence.
FL= gb:AK066560.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4975011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49730Os.50134.1.S1_at11/115+28440543..28442743Protein phosphatase 2C containing protein, expressed
LOC_Os05g49730Os.50134.2.S1_at10/115+28440543..28442743Protein phosphatase 2C containing protein, expressed
LOC_Os05g49740Os.54298.1.S1_at11/115+28450941..28453653pentatricopeptide, putative, expressed
LOC_Os05g49750Os.18409.1.S1_at11/115+28456444..28460577expressed protein
LOC_Os05g49760Os.2326.1.S1_s_at11/115+28464299..28468696Isocitrate dehydrogenase, putative, expressed
LOC_Os05g49760OsAffx.4669.1.S1_at9/115+28464299..28468696Isocitrate dehydrogenase, putative, expressed
LOC_Os05g49770Os.5124.1.S1_s_at11/115+28468040..28474037CTP synthase, putative, expressed
LOC_Os05g49770Os.5124.1.S1_at11/115+28468040..28474037CTP synthase, putative, expressed
LOC_Os05g49770Os.24180.1.A1_s_at1/115+28468040..28474037CTP synthase, putative, expressed
LOC_Os05g49770Os.14993.1.A1_at1/115+28468040..28474037CTP synthase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18409.1.S1_at--577--3571Chr05:28457012..28457036 (25 bp)
CATACCAGAAGCTTGATGCGGCGGA
LOC_Os05g49750
Os.18409.1.S1_at--160--5911Chr05:28456989..28457013 (25 bp)
GAGCTTCCTCTTTCGACTGGAGGGA
LOC_Os05g49750
Os.18409.1.S1_at--561--7151Chr05:28456856..28456880 (25 bp)
GTCTAGCTTCAAGGAGATCTACCAA
LOC_Os05g49750
Os.18409.1.S1_at--236--10191Chr05:28456806..28456830 (25 bp)
TATACTCCCTTTTCATGGATTGGAA
LOC_Os05g49750
Os.18409.1.S1_at--524--5231Chr05:28456730..28456754 (25 bp)
GAATATATATCCTTTTTGCCATCTT
LOC_Os05g49750
Os.18409.1.S1_at--118--1711Chr05:28456598..28456622 (25 bp)
ACCAATGTAGATATGTGCACCTGAT
LOC_Os05g49750
Os.18409.1.S1_at--414--8691Chr05:28456585..28456609 (25 bp)
TGTGCACCTGATATGTTCCCTACAA
LOC_Os05g49750
Os.18409.1.S1_at--788--2531Chr05:28456562..28456586 (25 bp)
AACTAAGGGATCTCCAGAGCTTCGC
LOC_Os05g49750
Os.18409.1.S1_at--60--5931Chr05:28456546..28456570 (25 bp)
GAGCTTCGCTTCACTTGTGCATGGA
LOC_Os05g49750
Os.18409.1.S1_at--1050--8871Chr05:28456514..28456538 (25 bp)
TGAGGCTCCAACTTCGTCTTGCAAT
LOC_Os05g49750
Os.18409.1.S1_at--158--6311Chr05:28456478..28456502 (25 bp)
GATGAGAGATCCACCGAACAATGAA
LOC_Os05g49750
Target Sequence 
CATACCAGAAGCTTGATGCGGCGGAGCTTCCTCTTTCGACTGGAGGGAAGAAAGAAGCAGATCAATCTGATCAGTGGGAT
GACAACTGGGGAGACGAGTGGGATGATGAGGNGCCATTGACGCCNAACCAGACATATGCCCANCCTATCATCCAAAGGTC
TAGCTTCAAGGAGATCTACCAAAGATGGCTGGAAAGANTAATGACAATATACTCCCTTTTCATGGATTGGAAAAATAGTT
CCAATGCCTATATCATATGATTTTTCTGTTCCATTATNTGAAAGAATATATATCCTTTTTGCCATCTTTATAATAGGAAA
ATTTTGTTCTCTTGCTNCCTTTNGNTTNATTTNTGGAGTGTATAAGAAGAGANTNCAGGGGCTAAGATATANTGGTTCAG
TTTGTGCATTNGTTCACCAATGTAGATATGTGCACCTGATATGTTCCCTACAACTAAGGGATCTCCAGAGCTTCGCTTCA
CTTGTGCATGGATTCCAACTGAGGCTCCAACTTCGTCTTGCAATCATGAAAGTTGGATGAGAGATCCACCGAACAATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18409.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis