Browse Element(s) Details


Os.50134.1.S1_at

Description gb:AK108969.1
DB_XREF= gi:32994178
TID=Os.50134.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50134 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-153-D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-153-D11, full insert sequence.
FL= gb:AK108969.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4973011/11Protein phosphatase 2C containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49700NANA5+28416382..28417280AP2 domain containing protein, expressed
LOC_Os05g49710OsAffx.21249.1.S1_at1/115+28420047..28425501retrotransposon protein, putative, unclassified
LOC_Os05g49710Os.17546.2.S1_x_at1/115+28420047..28425501retrotransposon protein, putative, unclassified
LOC_Os05g49720NANA5+28427397..28429278hypothetical protein
LOC_Os05g49730Os.50134.1.S1_at11/115+28440543..28442743Protein phosphatase 2C containing protein, expressed
LOC_Os05g49730Os.50134.2.S1_at10/115+28440543..28442743Protein phosphatase 2C containing protein, expressed
LOC_Os05g49740Os.54298.1.S1_at11/115+28450941..28453653pentatricopeptide, putative, expressed
LOC_Os05g49750Os.18409.1.S1_at11/115+28456444..28460577expressed protein
LOC_Os05g49760Os.2326.1.S1_s_at11/115+28464299..28468696Isocitrate dehydrogenase, putative, expressed
LOC_Os05g49760OsAffx.4669.1.S1_at9/115+28464299..28468696Isocitrate dehydrogenase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006470biological_processprotein amino acid dephosphorylation
GO:0006970biological_processresponse to osmotic stress
GO:0009408biological_processresponse to heat
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009738biological_processabscisic acid mediated signaling
GO:0009788biological_processnegative regulation of abscisic acid mediated signaling
GO:0008287cellular_componentprotein serine/threonine phosphatase complex
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
GO:0005509molecular_functioncalcium ion binding
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50134.1.S1_at--685--4351Chr05:28441179..28441203 (25 bp)
CCAGATCGGCCTGACGAGTTGGAAC
LOC_Os05g49730
Os.50134.1.S1_at--744--9951Chr05:28441113..28441137 (25 bp)
TACCGTGTCCTTGGTGTTTTAGCCA
LOC_Os05g49730
Os.50134.1.S1_at--567--6811Chr05:28441098..28441122 (25 bp)
GTTTTAGCCACTTCTAGATCCATAG
LOC_Os05g49730
Os.50134.1.S1_at--348--6371Chr05:28440991..28441106 (25 bp)
GATCCATAGGCGACTACTACCTGAA
LOC_Os05g49730
Os.50134.1.S1_at--359--8991Chr05:28440970..28440994 (25 bp)
TGAAGCCGTTCGTGAGCGCAGAGCC
LOC_Os05g49730
Os.50134.1.S1_at--268--2811Chr05:28440851..28440875 (25 bp)
AAGATCGCCAGGAACTGCCTCAACG
LOC_Os05g49730
Os.50134.1.S1_at--785--1071Chr05:28440683..28440707 (25 bp)
AGGGCAGCTTGAGCTTCGACATCAT
LOC_Os05g49730
Os.50134.1.S1_at--559--4691Chr05:28440647..28440671 (25 bp)
GCGGCACGTCGCTACTAATTAATAA
LOC_Os05g49730
Os.50134.1.S1_at--447--1591Chr05:28440613..28440637 (25 bp)
AGCTCCCTGTACATTACGTCGATGA
LOC_Os05g49730
Os.50134.1.S1_at--712--131Chr05:28440584..28440608 (25 bp)
ATTAATTTGGGCATCGCGCGGCGAG
LOC_Os05g49730
Os.50134.1.S1_at--119--3911Chr05:28440545..28440569 (25 bp)
CGGTTCCGGCGATGAAGGTTTCGAT
LOC_Os05g49730
Target Sequence 
CCAGATCGGCCTGACGAGTTGGAACGAGTGGAAGCAGCTGGAGGCAGAGTCATCAACTGGAACGGTTACCGTGTCCTTGG
TGTTTTAGCCACTTCTAGATCCATAGGCGACTACTACCTGAAGCCGTTCGTGAGCGCAGAGCCGGAGGTGAGGGTGGTGG
AGAGGACGGACAAGGACGAGTTCCTGATCCTGGCGAGCGACGGGCTGTGGGACGTGGTGTCCAACGAGGTGGCGTGCAAG
ATCGCCAGGAACTGCCTCAACGGCCGCGCGGCCTCCATGTTCCCGGAGTCCGTCTCCGGCAGCTCGGCCGCCGACGCCGC
GGCGCTCCTCGCCGAGCTCGCCGTCTCGCGCGGCAGCAGGGACAACATCAGCGTCGTCGTCGTCGAGCTCAGGCGGCTCA
AGAGCAGGGCAGCTTGAGCTTCGACATCATCCGCGATGGAGGCGGCACGTCGCTACTAATTAATAAGCTACTAGTAGCTC
CCTGTACATTACGTCGATGATACTATTAATTTGGGCATCGCGCGGCGAGACGCCGGAATTAAACGGTTCCGGCGATGAAG
GTTTCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50134.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis