Browse Element(s) Details


Os.5124.1.S1_at

Description gb:AK070411.1
DB_XREF= gi:32980435
TID=Os.5124.1
CNT=32
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5124 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023053C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023053C07, full insert sequence.
FL= gb:AK070411.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4977011/11CTP synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49740Os.54298.1.S1_at11/115+28450941..28453653pentatricopeptide, putative, expressed
LOC_Os05g49750Os.18409.1.S1_at11/115+28456444..28460577expressed protein
LOC_Os05g49760Os.2326.1.S1_s_at11/115+28464299..28468696Isocitrate dehydrogenase, putative, expressed
LOC_Os05g49760OsAffx.4669.1.S1_at9/115+28464299..28468696Isocitrate dehydrogenase, putative, expressed
LOC_Os05g49770Os.5124.1.S1_s_at11/115+28468040..28474037CTP synthase, putative, expressed
LOC_Os05g49770Os.5124.1.S1_at11/115+28468040..28474037CTP synthase, putative, expressed
LOC_Os05g49770Os.24180.1.A1_s_at1/115+28468040..28474037CTP synthase, putative, expressed
LOC_Os05g49770Os.14993.1.A1_at1/115+28468040..28474037CTP synthase, putative, expressed
LOC_Os05g49780Os.28038.1.S1_at10/115+28489163..28491882CCAAT-binding transcription factor subunit HAP3C, putative, expressed
LOC_Os05g49790OsAffx.4671.1.S1_x_at11/115+28494793..28495209expressed protein
LOC_Os05g49790OsAffx.4671.1.S1_at11/115+28494793..28495209expressed protein
LOC_Os05g49800Os.4761.1.S1_at11/115+28495967..28499343Ketol-acid reductoisomerase, chloroplast precursor, putative, expressed
LOC_Os05g49800Os.46673.1.S1_x_at1/115+28495967..28499343Ketol-acid reductoisomerase, chloroplast precursor, putative, expressed
LOC_Os05g49800Os.4767.2.S1_x_at1/115+28495967..28499343Ketol-acid reductoisomerase, chloroplast precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003883molecular_functionCTP synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5124.1.S1_at--1071--5051Chr05:28468475..28468499 (25 bp)
GCAGCATAGCTCTGCATCAGGCCAT
LOC_Os05g49770
Os.5124.1.S1_at--603--1531Chr05:28468473..28468497 (25 bp)
AGCATAGCTCTGCATCAGGCCATTG
LOC_Os05g49770
Os.5124.1.S1_at--432--3571Chr05:28468471..28468495 (25 bp)
CATAGCTCTGCATCAGGCCATTGCA
LOC_Os05g49770
Os.5124.1.S1_at--801--291Chr05:28468470..28468494 (25 bp)
ATAGCTCTGCATCAGGCCATTGCAC
LOC_Os05g49770
Os.5124.1.S1_at--409--1591Chr05:28468468..28468492 (25 bp)
AGCTCTGCATCAGGCCATTGCACTT
LOC_Os05g49770
Os.5124.1.S1_at--1107--9471Chr05:28468465..28468489 (25 bp)
TCTGCATCAGGCCATTGCACTTGAG
LOC_Os05g49770
Os.5124.1.S1_at--284--3851Chr05:28468464..28468488 (25 bp)
CTGCATCAGGCCATTGCACTTGAGA
LOC_Os05g49770
Os.5124.1.S1_at--361--4971Chr05:28468462..28468486 (25 bp)
GCATCAGGCCATTGCACTTGAGAGA
LOC_Os05g49770
Os.5124.1.S1_at--82--3571Chr05:28468461..28468485 (25 bp)
CATCAGGCCATTGCACTTGAGAGAT
LOC_Os05g49770
Os.5124.1.S1_at--704--411Chr05:28468460..28468484 (25 bp)
ATCAGGCCATTGCACTTGAGAGATT
LOC_Os05g49770
Os.5124.1.S1_at--746--3491Chr05:28468458..28468482 (25 bp)
CAGGCCATTGCACTTGAGAGATTTA
LOC_Os05g49770
Target Sequence 
GCAGCATAGCTCTGCATCAGGCCATTGCACTTGAGAGATTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5124.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis