Browse Element(s) Details


OsAffx.4671.1.S1_x_at

Description tigr:9633.m04678
TID=OsAffx.4671.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4979011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49770Os.5124.1.S1_s_at11/115+28468040..28474037CTP synthase, putative, expressed
LOC_Os05g49770Os.5124.1.S1_at11/115+28468040..28474037CTP synthase, putative, expressed
LOC_Os05g49770Os.24180.1.A1_s_at1/115+28468040..28474037CTP synthase, putative, expressed
LOC_Os05g49770Os.14993.1.A1_at1/115+28468040..28474037CTP synthase, putative, expressed
LOC_Os05g49780Os.28038.1.S1_at10/115+28489163..28491882CCAAT-binding transcription factor subunit HAP3C, putative, expressed
LOC_Os05g49790OsAffx.4671.1.S1_x_at11/115+28494793..28495209expressed protein
LOC_Os05g49790OsAffx.4671.1.S1_at11/115+28494793..28495209expressed protein
LOC_Os05g49800Os.4761.1.S1_at11/115+28495967..28499343Ketol-acid reductoisomerase, chloroplast precursor, putative, expressed
LOC_Os05g49800Os.46673.1.S1_x_at1/115+28495967..28499343Ketol-acid reductoisomerase, chloroplast precursor, putative, expressed
LOC_Os05g49800Os.4767.2.S1_x_at1/115+28495967..28499343Ketol-acid reductoisomerase, chloroplast precursor, putative, expressed
LOC_Os05g49810OsAffx.4672.1.S1_at11/115+28502389..28505608Armadillo/beta-catenin-like repeat family protein
LOC_Os05g49820OsAffx.15171.1.S1_at11/115+28505944..28510533hypothetical protein
LOC_Os05g49820Os.47086.1.S1_at1/115+28505944..28510533hypothetical protein
LOC_Os05g49830OsAffx.27387.2.S1_at11/115+28514304..28515613Lipase family protein, expressed
LOC_Os05g49840Os.54760.1.S1_at9/115+28515675..28519994Lipase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4671.1.S1_x_at--776--1911Chr05:28495070..28495094 (25 bp)
ACGTGGTGGAGGTCGGCTTCGCGCG
LOC_Os05g49790
OsAffx.4671.1.S1_x_at--1153--10631Chr05:28495053..28495077 (25 bp)
TTCGCGCGGGCCACGGGCTACATGT
LOC_Os05g49790
OsAffx.4671.1.S1_x_at--11--1911Chr05:28495041..28495065 (25 bp)
ACGGGCTACATGTGGATCGCGCAGC
LOC_Os05g49790
OsAffx.4671.1.S1_x_at--905--8191Chr05:28495013..28495037 (25 bp)
GGAAGGTGGAGCACCACTTCAGGAT
LOC_Os05g49790
OsAffx.4671.1.S1_x_at--1112--1691Chr05:28495001..28495025 (25 bp)
ACCACTTCAGGATGGTGGGCAAGCA
LOC_Os05g49790
OsAffx.4671.1.S1_x_at--682--6251Chr05:28494991..28495015 (25 bp)
GATGGTGGGCAAGCACGTCAGCTAC
LOC_Os05g49790
OsAffx.4671.1.S1_x_at--994--8611Chr05:28494989..28495013 (25 bp)
TGGTGGGCAAGCACGTCAGCTACGA
LOC_Os05g49790
OsAffx.4671.1.S1_x_at--209--8651Chr05:28494986..28495010 (25 bp)
TGGGCAAGCACGTCAGCTACGACGC
LOC_Os05g49790
OsAffx.4671.1.S1_x_at--960--3711Chr05:28494949..28494973 (25 bp)
CTACGTCAAGCCCAGGTGCATCAAG
LOC_Os05g49790
OsAffx.4671.1.S1_x_at--991--1891Chr05:28494947..28494971 (25 bp)
ACGTCAAGCCCAGGTGCATCAAGAA
LOC_Os05g49790
OsAffx.4671.1.S1_x_at--1045--9711Chr05:28494944..28494968 (25 bp)
TCAAGCCCAGGTGCATCAAGAAGCT
LOC_Os05g49790
Target Sequence 
ACGTGGTGGAGGTCGGCTTCGCGCGGGCCACGGGCTACATGTGGATCGCGCAGCGGAGGAAGGTGGAGCACCACTTCAGG
ATGGTGGGCAAGCACGTCAGCTACGACGCCGACATCACCGGCTACGTCAAGCCCAGGTGCATCAAGAAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4671.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis