Browse Element(s) Details


Os.57367.1.S1_at

Description gb:AK111387.1
DB_XREF= gi:32996596
TID=Os.57367.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57367 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-182-C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-182-C01, full insert sequence.
FL= gb:AK111387.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4991011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49850OsAffx.10048.1.S1_x_at1/115+28522656..28526918retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os05g49860OsAffx.10929.1.S1_x_at2/115+28528717..28529506Histone H2B, putative, expressed
LOC_Os05g49870NANA5+28530478..28533304retrotransposon protein, putative, unclassified
LOC_Os05g49880Os.11139.1.S1_at11/115+28534384..28538305Malate dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os05g49890Os.8152.1.S1_at11/115+28539165..28541469GTP-binding nuclear protein Ran/TC4, putative, expressed
LOC_Os05g49900Os.53085.1.S1_at11/115+28541952..28544278Fatty acid elongase, putative, expressed
LOC_Os05g49910Os.57367.1.S1_x_at11/115+28545588..28548920expressed protein
LOC_Os05g49910Os.57367.1.S1_at11/115+28545588..28548920expressed protein
LOC_Os05g49910Os.20347.1.S1_at8/115+28545588..28548920expressed protein
LOC_Os05g49920OsAffx.27388.1.S1_at11/115+28549790..28552533pentatricopeptide, putative, expressed
LOC_Os05g49930Os.47898.1.A1_at11/115+28557003..28558717GRAS family transcription factor containing protein, expressed
LOC_Os05g49940Os.27218.1.A1_at11/115+28564193..28564952expressed protein
LOC_Os05g49950NANA5+28566615..28567103hypothetical protein
LOC_Os05g49960OsAffx.27389.1.S1_at11/115+28568952..28569428hypothetical protein
LOC_Os05g49970Os.13493.1.S1_at11/115+28571458..28578090Translation initiation factor IF-2, chloroplast precursor, putative, expressed
LOC_Os05g49970Os.13493.1.S1_s_at11/115+28571458..28578090Translation initiation factor IF-2, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57367.1.S1_at--344--4191Chr05:28546749..28546773 (25 bp)
CCCTTAATATTTCTGTCTATCGTAC
LOC_Os05g49910
Os.57367.1.S1_at--542--10171Chr05:28546742..28546766 (25 bp)
TATTTCTGTCTATCGTACAATGAGA
LOC_Os05g49910
Os.57367.1.S1_at--876--3691Chr05:28546733..28546757 (25 bp)
CTATCGTACAATGAGACAAATTATC
LOC_Os05g49910
Os.57367.1.S1_at--111--5991Chr05:28546721..28546745 (25 bp)
GAGACAAATTATCTTGATCTTGAAT
LOC_Os05g49910
Os.57367.1.S1_at--393--6431Chr05:28546706..28546730 (25 bp)
GATCTTGAATCTGATCGTGCTAACA
LOC_Os05g49910
Os.57367.1.S1_at--864--5251Chr05:28546700..28546724 (25 bp)
GAATCTGATCGTGCTAACAGAACCT
LOC_Os05g49910
Os.57367.1.S1_at--1053--6391Chr05:28546694..28546718 (25 bp)
GATCGTGCTAACAGAACCTATATAA
LOC_Os05g49910
Os.57367.1.S1_at--647--3411Chr05:28546683..28546707 (25 bp)
CAGAACCTATATAAGCAAAGAGTGT
LOC_Os05g49910
Os.57367.1.S1_at--312--3291Chr05:28546668..28546692 (25 bp)
CAAAGAGTGTGGGTTCGAGGATCAC
LOC_Os05g49910
Os.57367.1.S1_at--698--7871Chr05:28546657..28546681 (25 bp)
GGTTCGAGGATCACGTCCGGAGGAA
LOC_Os05g49910
Os.57367.1.S1_at--426--1892Chr04:19605492..19605511 (20 bp)
ACGTCCGGAGGAAGAAGCTATATTT
NONE
Target Sequence 
CCCTTAATATTTCTGTCTATCGTACAATGAGACAAATTATCTTGATCTTGAATCTGATCGTGCTAACAGAACCTATATAA
GCAAAGAGTGTGGGTTCGAGGATCACGTCCGGAGGAAGAAGCTATATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57367.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis