Browse Element(s) Details


Os.52477.1.S1_at

Description gb:AK067385.1
DB_XREF= gi:32977403
TID=Os.52477.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52477 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013100I19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013100I19, full insert sequence.
FL= gb:AK067385.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1919011/11BRCA1 C Terminus domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19150NANA3+10711296..10714341retrotransposon protein, putative, unclassified
LOC_Os03g19160Os.35344.18.S1_x_at11/113+10718699..10723852transposon protein, putative, Mutator sub-class
LOC_Os03g19160Os.35344.3.S1_x_at9/113+10718699..10723852transposon protein, putative, Mutator sub-class
LOC_Os03g19160OsAffx.22940.5.S1_x_at3/113+10718699..10723852transposon protein, putative, Mutator sub-class
LOC_Os03g19170Os.57195.1.S1_at11/113+10727582..10728584expressed protein
LOC_Os03g19180OsAffx.12933.1.S1_at11/113+10729174..10730117hypothetical protein
LOC_Os03g19190Os.52477.1.S1_at11/113+10731625..10738874BRCA1 C Terminus domain containing protein, expressed
LOC_Os03g19200Os.14195.1.S1_at10/113+10751427..10754538TPR Domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005622cellular_componentintracellular
GO:0003713molecular_functiontranscription coactivator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52477.1.S1_at--126--7111Chr03:10738286..10738310 (25 bp)
GTCACGATATTCCTTGTATCACTGC
LOC_Os03g19190
Os.52477.1.S1_at--774--10771Chr03:10738322..10738346 (25 bp)
TTGAGTACGTCTGCAAGCATGGGCA
LOC_Os03g19190
Os.52477.1.S1_at--130--811Chr03:10738340..10738364 (25 bp)
ATGGGCATCCGCTCGACAGGCATGT
LOC_Os03g19190
Os.52477.1.S1_at--34--5671Chr03:10738354..10738378 (25 bp)
GACAGGCATGTTCTCTTCAACACAA
LOC_Os03g19190
Os.52477.1.S1_at--522--1771Chr03:10738549..10738573 (25 bp)
ACCGGCTGCGGTGTAGGTATGCACA
LOC_Os03g19190
Os.52477.1.S1_at--458--10091Chr03:10738562..10738586 (25 bp)
TAGGTATGCACATCGACTGCTGCGA
LOC_Os03g19190
Os.52477.1.S1_at--1095--4631Chr03:10738663..10738687 (25 bp)
GCGTCACGCGTAGCTAGCAAATCGA
LOC_Os03g19190
Os.52477.1.S1_at--785--10311Chr03:10738726..10738750 (25 bp)
TTTCTGCTTTCACCCTGTTTTATTG
LOC_Os03g19190
Os.52477.1.S1_at--127--3891Chr03:10738812..10738836 (25 bp)
CTGTCTCGGCATTTCTGAGTGTAGT
LOC_Os03g19190
Os.52477.1.S1_at--1099--7431Chr03:10738830..10738854 (25 bp)
GTGTAGTTTTTTCTCATTCTGCTGC
LOC_Os03g19190
Os.52477.1.S1_at--392--111Chr03:10738845..10738869 (25 bp)
ATTCTGCTGCTATACAGGCGTGTTT
LOC_Os03g19190
Target Sequence 
GTCACGATATTCCTTGTATCACTGCTGATTATCTTGTTGAGTACGTCTGCAAGCATGGGCATCCGCTCGACAGGCATGTT
CTCTTCAACACAAACGATCTGGCCAACAAGTCCCTCAAGAAACTACTGCAAAACCAGCAAGAGGTGGCCACAGATGTACT
GAAGCCACAGGAGGACGGAGATCCCGACGACCTGAGCTGCTCGGCGTGCGGGAGTACGGACCGGGGCGAGGTGATGCTCA
TCTGCGGCAACGAGGATGGCTCGACCGGCTGCGGTGTAGGTATGCACATCGACTGCTGCGACCCTCCCCTGGAAGCTGTC
CCAGAACATGACTGGCTGTGCCCCCAGTGCGAAATGCCCAAAGCGACGAAGAAATCTGCGTCACGCGTAGCTAGCAAATC
GAGAGTATCCAAGCGAAAAAGGTGATTTTTCTGCCTTTTTTTTCTGCTTTCACCCTGTTTTATTGAACAGAATAAACGGT
GTGTTTATTTTCGTCCGTTGTAAAGTTTTTATCAGTGGCAGAGATGCTGTCTCGGCATTTCTGAGTGTAGTTTTTTCTCA
TTCTGCTGCTATACAGGCGTGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52477.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis