Browse Element(s) Details


Os.5250.1.S1_at

Description gb:AK070948.1
DB_XREF= gi:32980971
TID=Os.5250.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5250 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023072D17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023072D17, full insert sequence.
FL= gb:AK070948.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4424011/11Cytokinin-O-glucosyltransferase 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44224OsAffx.9169.1.S1_at1/114+25965896..25967826hypothetical protein
LOC_Os04g44230OsAffx.26455.1.S1_at11/114+25980070..25984574Cytokinin dehydrogenase 5 precursor, putative
LOC_Os04g44240Os.5250.1.S1_at11/114+25986970..25988687Cytokinin-O-glucosyltransferase 3, putative, expressed
LOC_Os04g44250OsAffx.4084.1.S1_at11/114+25994621..25996321UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g44260OsAffx.26456.1.S1_at11/114+25999104..25999649Thioredoxin reductase 1, putative
LOC_Os04g44270Os.50619.1.S1_x_at1/114+26004418..26007016retrotransposon protein, putative, unclassified
LOC_Os04g44280Os.54667.1.S1_at9/114+26008134..26009353Two-component response regulator ARR3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5250.1.S1_at--504--1911Chr04:25987381..25987405 (25 bp)
ACGTGCTTGGGATCGGCGTGTCCAT
LOC_Os04g44240
Os.5250.1.S1_at--758--7451Chr04:25987364..25987388 (25 bp)
GTGTCCATCGGCGTGACGAAGCCCA
LOC_Os04g44240
Os.5250.1.S1_at--1034--1071Chr04:25987268..25987292 (25 bp)
AGGGCCTTGAACAGTCTCATGGACG
LOC_Os04g44240
Os.5250.1.S1_at--168--7571Chr04:25987222..25987246 (25 bp)
GGGCGAAGAAAGTTCACGAGCTCAA
LOC_Os04g44240
Os.5250.1.S1_at--87--3211Chr04:25987194..25987218 (25 bp)
CAAGGCTCACGCTGCTTTGGAGAAG
LOC_Os04g44240
Os.5250.1.S1_at--259--5351Chr04:25987143..25987167 (25 bp)
GAAGTTGATCTTATCTGCGGTTTGA
LOC_Os04g44240
Os.5250.1.S1_at--10--3971Chr04:25987110..25987134 (25 bp)
CGGTTTGCGTTATCATATCATCTCA
LOC_Os04g44240
Os.5250.1.S1_at--125--6591Chr04:25987058..25987082 (25 bp)
GATTGAACTATTGATGTACTCGGGA
LOC_Os04g44240
Os.5250.1.S1_at--538--6991Chr04:25987043..25987067 (25 bp)
GTACTCGGGATATTGGTTTCTTGTT
LOC_Os04g44240
Os.5250.1.S1_at--1119--5431Chr04:25987018..25987042 (25 bp)
GAACCGTGGTATTGTGCGTTTCCAT
LOC_Os04g44240
Os.5250.1.S1_at--642--10831Chr04:25987007..25987031 (25 bp)
TTGTGCGTTTCCATGCGCAAAGGAT
LOC_Os04g44240
Target Sequence 
ACGTGCTTGGGATCGGCGTGTCCATCGGCGTGACGAAGCCCACCGGCGGCATGCTAACCGCCGGTGGCGGGGGCGGCGAG
GAGACGGCAGAGGTCGGAACGGAGCAGGTGAAGAGGGCCTTGAACAGTCTCATGGACGGAGGAGTCGAAGGAGAAGAGAG
GGCGAAGAAAGTTCACGAGCTCAAGGCCAAGGCTCACGCTGCTTTGGAGAAGGAGGGGTCATCCTACATGAATCTGGAGA
AGTTGATCTTATCTGCGGTTTGAAATTTGATCGGTTTGCGTTATCATATCATCTCATTTTCTGAATAAATTCCTGTATTT
GATGATTGAACTATTGATGTACTCGGGATATTGGTTTCTTGTTGAACCGTGGTATTGTGCGTTTCCATGCGCAAAGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5250.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis