Browse Element(s) Details


Os.54667.1.S1_at

Description gb:AK106426.1
DB_XREF= gi:32991635
TID=Os.54667.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54667 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-103-B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-103-B09, full insert sequence.
FL= gb:AK106426.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g442809/11Two-component response regulator ARR3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44230OsAffx.26455.1.S1_at11/114+25980070..25984574Cytokinin dehydrogenase 5 precursor, putative
LOC_Os04g44240Os.5250.1.S1_at11/114+25986970..25988687Cytokinin-O-glucosyltransferase 3, putative, expressed
LOC_Os04g44250OsAffx.4084.1.S1_at11/114+25994621..25996321UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g44260OsAffx.26456.1.S1_at11/114+25999104..25999649Thioredoxin reductase 1, putative
LOC_Os04g44270Os.50619.1.S1_x_at1/114+26004418..26007016retrotransposon protein, putative, unclassified
LOC_Os04g44280Os.54667.1.S1_at9/114+26008134..26009353Two-component response regulator ARR3, putative, expressed
LOC_Os04g44290Os.16373.1.A1_at11/114+26013773..26018424expressed protein
LOC_Os04g44300Os.17174.1.S1_at11/114+26017140..26021533transposon protein, putative, unclassified, expressed
LOC_Os04g44310OsAffx.26457.1.S1_at11/114+26022368..26023084hypothetical protein
LOC_Os04g44320Os.10860.2.S1_at4/114+26028709..26032899transposon protein, putative, unclassified, expressed
LOC_Os04g44320Os.50465.1.S1_x_at1/114+26028709..26032899transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000160biological_processtwo-component signal transduction system (phosphorelay)
GO:0006950biological_processresponse to stress
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009736biological_processcytokinin mediated signaling
GO:0010017biological_processred or far red light signaling pathway
GO:0010161biological_processred light signaling pathway
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0000156molecular_functiontwo-component response regulator activity
GO:0005515molecular_functionprotein binding
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54667.1.S1_at--748--1291Chr04:26008599..26008623 (25 bp)
AGATGACCGGGTATGAACTCCTGAA
LOC_Os04g44280
Os.54667.1.S1_at--605--771Chr04:26008781..26008805 (25 bp)
ATGTCCTCGGAGAACGTCTCTACAA
LOC_Os04g44280
Os.54667.1.S1_at--256--1011Chr04:26008925..26008949 (25 bp)
AGGATTTCTTGCTGAAGCCCGTGCA
LOC_Os04g44280
Os.54667.1.S1_at--164--8991Chr04:26009035..26009059 (25 bp)
TGAAGCGTCCCTGCATGCATATGCG
LOC_Os04g44280
Os.54667.1.S1_at--1098--4931Chr04:26009051..26009075 (25 bp)
GCATATGCGGCTTCAGTGTTTTGGG
LOC_Os04g44280
Os.54667.1.S1_at--1136--1091Chr04:26009123..26009147 (25 bp)
AGTGGTAGCCAAACGCACTGTGCGC
LOC_Os04g44280
Os.54667.1.S1_at--764--9771Chr04:26009164..26009188 (25 bp)
TAATGGGCTGAATTTGCCTCTCCCT
LOC_Os04g44280
Os.54667.1.S1_at--1058--5271Chr04:26009209..26009233 (25 bp)
GAATGTCATGTTCTAGCTGTTCCCT
LOC_Os04g44280
Os.54667.1.S1_at--761--1611Chr04:26009223..26009247 (25 bp)
AGCTGTTCCCTGTGTCGATCTAGAA
LOC_Os04g44280
Os.54667.1.S1_at--244--10791NONE
TTGTTCCATCGGTTTGTTCATTCAG
NONE
Os.54667.1.S1_at--302--3451NONE
CAGTTCATCCGTTTTTCTAGTTATA
NONE
Target Sequence 
AGATGACCGGGTATGAACTCCTGAAGAAGGTCAAGGAGTCGTCCAGGCTGAAGGAGATCCCTGTGGTGATCATGTCCTCG
GAGAACGTCTCTACAAGGATCAACAGGTGCTTGGAGGAAGGAGCGGAGGATTTCTTGCTGAAGCCCGTGCAGCCGTCGGA
CGTGTCGCGGCTGTGCAGCCGCGTCCTCCGGTGAGCCGTGCAGGCGGCGGCCGGTCGGGTGGGCGTCGTGGGCGACTGAA
GCGTCCCTGCATGCATATGCGGCTTCAGTGTTTTGGGGGTTGGAATTAATAGCAGCAGAAGCAGAAGCAGTAGTAGTAGT
GATTAGTGGTAGCCAAACGCACTGTGCGCTTGCAGATGTTGTGGTTAATGGGCTGAATTTGCCTCTCCCTTTCTCTATTT
TTCTCATTCCGAATGTCATGTTCTAGCTGTTCCCTGTGTCGATCTAGAATGCAGTTTGTTCCATCGGTTTGTTCATTCAG
TTGAAAAACCTGTTGCAACAAATGTCTAATTTTATGTTCTTAACAGTTCATCCGTTTTTCTAGTTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54667.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis