Browse Element(s) Details


Os.10860.2.S1_at

Description gb:AK069437.1
DB_XREF= gi:32979461
TID=Os.10860.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10860 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-128-C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023023O07, full insert sequence.
FL= gb:AK069437.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g443204/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44270Os.50619.1.S1_x_at1/114+26004418..26007016retrotransposon protein, putative, unclassified
LOC_Os04g44280Os.54667.1.S1_at9/114+26008134..26009353Two-component response regulator ARR3, putative, expressed
LOC_Os04g44290Os.16373.1.A1_at11/114+26013773..26018424expressed protein
LOC_Os04g44300Os.17174.1.S1_at11/114+26017140..26021533transposon protein, putative, unclassified, expressed
LOC_Os04g44310OsAffx.26457.1.S1_at11/114+26022368..26023084hypothetical protein
LOC_Os04g44320Os.10860.2.S1_at4/114+26028709..26032899transposon protein, putative, unclassified, expressed
LOC_Os04g44320Os.50465.1.S1_x_at1/114+26028709..26032899transposon protein, putative, unclassified, expressed
LOC_Os04g44330OsAffx.26458.1.S1_at11/114+26034738..26037698transposon protein, putative, unclassified, expressed
LOC_Os04g44340Os.17549.1.S1_at11/114+26038901..26040701expressed protein
LOC_Os04g44354Os.49324.1.S1_at11/114+26041372..26048347UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g44354Os.27292.1.A1_at10/114+26041372..26048347UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g44370OsAffx.21308.1.S1_at5/114+26049574..26055408retrotransposon, putative, centromere-specific
LOC_Os04g44370OsAffx.25367.1.S1_at1/114+26049574..26055408retrotransposon, putative, centromere-specific
LOC_Os04g44370Os.20321.1.S1_at1/114+26049574..26055408retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10860.2.S1_at--123--531Chr04:26032675..26032699 (25 bp)
ATCGACATGTTCATCGGCACCGTCA
LOC_Os04g44320
Os.10860.2.S1_at--331--7131Chr04:26032696..26032720 (25 bp)
GTCATCCTCTTCGTGTGGGAGATGG
LOC_Os04g44320
Os.10860.2.S1_at--966--8991Chr04:26032844..26032868 (25 bp)
TGAAGTTTCTGTCGCGATCGGTGAA
LOC_Os04g44320
Os.10860.2.S1_at--739--3211Chr04:26032873..26032897 (25 bp)
CAAGTGGATGGTTTCCTGGGTAACT
LOC_Os04g44320
Os.10860.2.S1_at--588--6431Chr04:26032904..26032928 (25 bp)
GATCAGCCTGAAATCATCGCCAATG
NONE
Os.10860.2.S1_at--395--7351Chr04:26032928..26032952 (25 bp)
GTGAACAACCACTCTGTATCATCTG
NONE
Os.10860.2.S1_at--737--6891Chr04:26032943..26032967 (25 bp)
GTATCATCTGTGTCATCATCCTGCA
NONE
Os.10860.2.S1_at--296--9611Chr04:26032958..26032982 (25 bp)
TCATCCTGCAATCTCGGTTTCAAAA
NONE
Os.10860.2.S1_at--159--491Chr04:26033039..26033063 (25 bp)
ATCTGTCTCTGAACACCTGTATATG
NONE
Os.10860.2.S1_at--338--7371Chr04:26033074..26033098 (25 bp)
GTGACAATCATCCTTGAATCCTTGA
NONE
Os.10860.2.S1_at--826--5191Chr04:26033137..26033161 (25 bp)
GCAATCATCAGTAAGTGGCGTTCTA
NONE
Target Sequence 
ATCGACATGTTCATCGGCACCGTCATCCTCTTCGTGTGGGAGATGGTGAACAAGGCCAAGGCGGAAGCGTTCGCGCCGGC
GGTCGCCTCCGGCTTGATCTGCGGCGACGGCATCTGGACATTGCCGCAGTCCATCCTTGCCCTCGCCAAGGTGAAGCCGC
CGATCTGCATGAAGTTTCTGTCGCGATCGGTGAATGCGCAAGTGGATGGTTTCCTGGGTAACTAGATGTGATCAGCCTGA
AATCATCGCCAATGTGAACAACCACTCTGTATCATCTGTGTCATCATCCTGCAATCTCGGTTTCAAAAAAAAAAAATCAT
CCTGCAATCAGGATATCGTATGTTCTGTTAGGGATTGTACTATAATCTGTCTCTGAACACCTGTATATGTTAGTGGAGTG
TGACAATCATCCTTGAATCCTTGATTCCAAATTTCCAGTGTTGTAATTGTATATATATTCCTGCAATCATCAGTAAGTGG
CGTTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10860.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis