Browse Element(s) Details


OsAffx.26458.1.S1_at

Description tigr:9632.m04254
TID=OsAffx.26458.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4433011/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44290Os.16373.1.A1_at11/114+26013773..26018424expressed protein
LOC_Os04g44300Os.17174.1.S1_at11/114+26017140..26021533transposon protein, putative, unclassified, expressed
LOC_Os04g44310OsAffx.26457.1.S1_at11/114+26022368..26023084hypothetical protein
LOC_Os04g44320Os.10860.2.S1_at4/114+26028709..26032899transposon protein, putative, unclassified, expressed
LOC_Os04g44320Os.50465.1.S1_x_at1/114+26028709..26032899transposon protein, putative, unclassified, expressed
LOC_Os04g44330OsAffx.26458.1.S1_at11/114+26034738..26037698transposon protein, putative, unclassified, expressed
LOC_Os04g44340Os.17549.1.S1_at11/114+26038901..26040701expressed protein
LOC_Os04g44354Os.49324.1.S1_at11/114+26041372..26048347UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g44354Os.27292.1.A1_at10/114+26041372..26048347UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g44370OsAffx.21308.1.S1_at5/114+26049574..26055408retrotransposon, putative, centromere-specific
LOC_Os04g44370OsAffx.25367.1.S1_at1/114+26049574..26055408retrotransposon, putative, centromere-specific
LOC_Os04g44370Os.20321.1.S1_at1/114+26049574..26055408retrotransposon, putative, centromere-specific
LOC_Os04g44380OsAffx.21308.2.S1_x_at1/114+26057963..26059095hypothetical protein
LOC_Os04g44390NANA4+26059728..26060489hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26458.1.S1_at--64--7951Chr04:26037120..26037144 (25 bp)
GGATATATGACTTTAGCCTCGCCAA
LOC_Os04g44330
OsAffx.26458.1.S1_at--498--3231Chr04:26037142..26037166 (25 bp)
CAAGATCCATGTTTGTCAGCCAGGT
LOC_Os04g44330
OsAffx.26458.1.S1_at--261--7151Chr04:26037204..26037228 (25 bp)
GTCTTCTGGCTGTTCTACAAATCCT
LOC_Os04g44330
OsAffx.26458.1.S1_at--683--1171Chr04:26037328..26037352 (25 bp)
AGTACTGCCTTACACTATGCTACAT
LOC_Os04g44330
OsAffx.26458.1.S1_at--891--9871Chr04:26037348..26037372 (25 bp)
TACATAGCCTTTGTTGCTGCCTTCA
LOC_Os04g44330
OsAffx.26458.1.S1_at--526--851Chr04:26037432..26037456 (25 bp)
ATGGCAGCAGCAATTCCTTTCTATC
LOC_Os04g44330
OsAffx.26458.1.S1_at--452--431Chr04:26037454..26037478 (25 bp)
ATCTTGGACCATACTTCGCCATTGA
LOC_Os04g44330
OsAffx.26458.1.S1_at--1123--791Chr04:26037486..26037510 (25 bp)
ATGGGCAGCGTAATTCTCTATTTCT
LOC_Os04g44330
OsAffx.26458.1.S1_at--429--2791Chr04:26037526..26037550 (25 bp)
AAGATGAAGCGCAGTCGTTCGGTCC
LOC_Os04g44330
OsAffx.26458.1.S1_at--861--3871Chr04:26037604..26037628 (25 bp)
CTGTTCTTTCTCTTGTCAACGTGAA
LOC_Os04g44330
OsAffx.26458.1.S1_at--448--9011Chr04:26037625..26037649 (25 bp)
TGAATCCTCCGCTTTGCATGAAGTT
LOC_Os04g44330
Target Sequence 
GGATATATGACTTTAGCCTCGCCAAGATCCATGTTTGTCAGCCAGGTGATAGGTACTGCCATGGGGTGTGTTATTGCACC
CTGCGTCTTCTGGCTGTTCTACAAATCCTTTAATATCGGTGCAAGTGATGGTGCTTACCCAGCACCTTACACCATTATGT
ACCGTAACATGGCGATTCTGGGTGTCAATGGATTATCCTCATTGCCAAAGTACTGCCTTACACTATGCTACATAGCCTTT
GTTGCTGCCTTCATCATCAATCTGATAAAAGACCTGGTACCAGAGAGAGTGGCAAAGTACATCCCGATCCCCATGGCAGC
AGCAATTCCTTTCTATCTTGGACCATACTTCGCCATTGATATGTTCATGGGCAGCGTAATTCTCTATTTCTGGGAATGGA
GGAACAAAGATGAAGCGCAGTCGTTCGGTCCAGCAGTTGCGTCGGGCTTGATGTGCGGTGATGGGCTATGGGCCCTACCT
CAGGCTGTTCTTTCTCTTGTCAACGTGAATCCTCCGCTTTGCATGAAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26458.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis