Browse Element(s) Details


Os.17549.1.S1_at

Description gb:AK067753.1
DB_XREF= gi:32977771
TID=Os.17549.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17549 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013118G14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013118G14, full insert sequence.
FL= gb:AK067753.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4434011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44290Os.16373.1.A1_at11/114+26013773..26018424expressed protein
LOC_Os04g44300Os.17174.1.S1_at11/114+26017140..26021533transposon protein, putative, unclassified, expressed
LOC_Os04g44310OsAffx.26457.1.S1_at11/114+26022368..26023084hypothetical protein
LOC_Os04g44320Os.10860.2.S1_at4/114+26028709..26032899transposon protein, putative, unclassified, expressed
LOC_Os04g44320Os.50465.1.S1_x_at1/114+26028709..26032899transposon protein, putative, unclassified, expressed
LOC_Os04g44330OsAffx.26458.1.S1_at11/114+26034738..26037698transposon protein, putative, unclassified, expressed
LOC_Os04g44340Os.17549.1.S1_at11/114+26038901..26040701expressed protein
LOC_Os04g44354Os.49324.1.S1_at11/114+26041372..26048347UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g44354Os.27292.1.A1_at10/114+26041372..26048347UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g44370OsAffx.21308.1.S1_at5/114+26049574..26055408retrotransposon, putative, centromere-specific
LOC_Os04g44370OsAffx.25367.1.S1_at1/114+26049574..26055408retrotransposon, putative, centromere-specific
LOC_Os04g44370Os.20321.1.S1_at1/114+26049574..26055408retrotransposon, putative, centromere-specific
LOC_Os04g44380OsAffx.21308.2.S1_x_at1/114+26057963..26059095hypothetical protein
LOC_Os04g44390NANA4+26059728..26060489hypothetical protein
LOC_Os04g44400Os.50580.1.S1_at11/114+26065574..26066794ATP-dependent Clp protease proteolytic subunit, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17549.1.S1_at--410--3391Chr04:26039603..26039737 (25 bp)
CAGCGATCCATCTGTTATCTACGTG
LOC_Os04g44340
Os.17549.1.S1_at--1074--8771Chr04:26039591..26039614 (24 bp)
TGTTATCTACGTGAGACCAGGTGTA
LOC_Os04g44340
Os.17549.1.S1_at--411--6951Chr04:26039569..26039593 (25 bp)
GTAGAGGTTGATCTTGACTCCGTGA
LOC_Os04g44340
Os.17549.1.S1_at--1058--10751Chr04:26039556..26039580 (25 bp)
TTGACTCCGTGATCCAAGAGACGAT
LOC_Os04g44340
Os.17549.1.S1_at--953--1391Chr04:26039538..26039562 (25 bp)
AGACGATACGGCTAACGGCATCTGC
LOC_Os04g44340
Os.17549.1.S1_at--870--8271Chr04:26039438..26039546 (25 bp)
GGCATCTGCCAAGAGTTCATGCTCA
LOC_Os04g44340
Os.17549.1.S1_at--766--5531Chr04:26039404..26039428 (25 bp)
GAAAAATCTACTGTCGTATGGCAAT
LOC_Os04g44340
Os.17549.1.S1_at--44--2671Chr04:26039271..26039295 (25 bp)
AAGCGTTACAGCCAACGGTGGTCGA
LOC_Os04g44340
Os.17549.1.S1_at--676--7731Chr04:26039255..26039279 (25 bp)
GGTGGTCGAAACTTCTGGACCTGAA
LOC_Os04g44340
Os.17549.1.S1_at--944--2611Chr04:26039029..26039053 (25 bp)
AACCCGCTAGCTCTTCGATCTGATC
LOC_Os04g44340
Os.17549.1.S1_at--360--5631Chr04:26038943..26038967 (25 bp)
GACACGATTAGCCAGTTAGCACACT
LOC_Os04g44340
Target Sequence 
CAGCGATCCATCTGTTATCTACGTGAGACCAGGTGTAGAGGTTGATCTTGACTCCGTGATCCAAGAGACGATACGGCTAA
CGGCATCTGCCAAGAGTTCATGCTCAGAGGCATGCGAAAAATCTACTGTCGTATGGCAATATGGTGGTAACCAGAAGAAG
CGTTACAGCCAACGGTGGTCGAAACTTCTGGACCTGAAGAAAACTCTGGATAAGNCGNCTANCTGAACCACGACGCACAT
TCATTCAACAGAATGAACACATGCTAGTACAAAATGAGTCAAATGACGCTGGAACCCAAGACGCAGCGGATTGCTCTACC
AAAATACAAGTGTTTCTGGCTATATATCTTATATCCGAACAAGGAACGGAGGGTGTAGCAGAGAAACAAGCTGCATCGCA
ACCCGCTAGCTCTTCGATCTGATCATCTGAATCCTGTGTATAGAACTGTGCCATGTATACGTATAGATGACAATAAACAT
CACTGGACACGATTAGCCAGTTAGCACACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17549.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis