Browse Element(s) Details


Os.16373.1.A1_at

Description gb:AK103349.1
DB_XREF= gi:32988558
TID=Os.16373.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16373 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033126F21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033126F21, full insert sequence.
FL= gb:AK103349.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4429011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44250OsAffx.4084.1.S1_at11/114+25994621..25996321UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g44260OsAffx.26456.1.S1_at11/114+25999104..25999649Thioredoxin reductase 1, putative
LOC_Os04g44270Os.50619.1.S1_x_at1/114+26004418..26007016retrotransposon protein, putative, unclassified
LOC_Os04g44280Os.54667.1.S1_at9/114+26008134..26009353Two-component response regulator ARR3, putative, expressed
LOC_Os04g44290Os.16373.1.A1_at11/114+26013773..26018424expressed protein
LOC_Os04g44300Os.17174.1.S1_at11/114+26017140..26021533transposon protein, putative, unclassified, expressed
LOC_Os04g44310OsAffx.26457.1.S1_at11/114+26022368..26023084hypothetical protein
LOC_Os04g44320Os.10860.2.S1_at4/114+26028709..26032899transposon protein, putative, unclassified, expressed
LOC_Os04g44320Os.50465.1.S1_x_at1/114+26028709..26032899transposon protein, putative, unclassified, expressed
LOC_Os04g44330OsAffx.26458.1.S1_at11/114+26034738..26037698transposon protein, putative, unclassified, expressed
LOC_Os04g44340Os.17549.1.S1_at11/114+26038901..26040701expressed protein
LOC_Os04g44354Os.49324.1.S1_at11/114+26041372..26048347UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g44354Os.27292.1.A1_at10/114+26041372..26048347UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0048366biological_processleaf development
GO:0009706cellular_componentchloroplast inner membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16373.1.A1_at--930--9291Chr04:26017130..26017154 (25 bp)
TCCCTTGTTTAGCTGTTTGGGACAA
LOC_Os04g44290
Os.16373.1.A1_at--384--7051Chr04:26017217..26017241 (25 bp)
GTAAGGACCGGATATGTCCCTCAAA
LOC_Os04g44290
Os.16373.1.A1_at--610--9751Chr04:26017242..26017266 (25 bp)
TAATTTCTCTGTTTCGTGCTATACA
LOC_Os04g44290
Os.16373.1.A1_at--1069--6492Chr11:18757455..18757689 (25 bp)
GATAGGTCATGCTCGTGCACATTTT
NONE
Os.16373.1.A1_at--317--171Chr04:26017434..26017458 (25 bp)
ATTTTGTACATGCATGGCTCGCCTG
LOC_Os04g44290
Os.16373.1.A1_at--697--8471Chr04:26017457..26017481 (25 bp)
TGGCGCTGGAGCACCTGAATCAGTG
LOC_Os04g44290
Os.16373.1.A1_at--181--6631Chr04:26017487..26017511 (25 bp)
GTTGTGCACTCTCTTTCAGTTTCAA
LOC_Os04g44290
Os.16373.1.A1_at--1016--6811Chr04:26017505..26017529 (25 bp)
GTTTCAACTTCAGACGAGTACTCGA
LOC_Os04g44290
Os.16373.1.A1_at--338--1971Chr04:26017563..26017587 (25 bp)
ACTGCAACTTAAGCCTATCATCATG
LOC_Os04g44290
Os.16373.1.A1_at--1111--631Chr04:26017591..26017615 (25 bp)
ATGCATCCAGAGCAGATCAGATCGC
LOC_Os04g44290
Os.16373.1.A1_at--1052--171Chr04:26017638..26017662 (25 bp)
ATTTATTCCCATTCTTGTCTCTGTA
LOC_Os04g44290
Target Sequence 
TCCCTTGTTTAGCTGTTTGGGACAAACATGAAAGTTGTTCATCAAATGTGCATTAATGATTGATACAACACTTTTGTCTT
ACAGCAAGTAAGGACCGGATATGTCCCTCAAATAATTTCTCTGTTTCGTGCTATACATGTGTGGAGTACATCTNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNCCTGTTCGTCGAATTTGTAGGTGACGAGTGAGGCGGAGAGGCATAAGACTGATGA
TGAAGCAGATAGGGGAGAAACTGGATAATCAGATTCTGGAGGCAGATAGGTCATGCTCGTGCACATTTTGTACATGCATG
GCTCGCCTGGCGCTGGAGCACCTGAATCAGTGCTAGTGTTGTGCACTCTCTTTCAGTTTCAACTTCAGACGAGTACTCGA
GTGAAGGACACAGGTACAATTGACAACAATCTTACTGCAACTTAAGCCTATCATCATGCATATGCATCCAGAGCAGATCA
GATCGCAGAGAATAACGTAAACAAGATAATTTATTCCCATTCTTGTCTCTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16373.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis